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Table 2 Count table assessment summary

From: A framework for assessing 16S rRNA marker-gene survey data analysis methods using mixtures.

AssessmentMeasurandMetricPipelinesRank
QualitativePresence/ absenceAFPDADA23
   Mothur1
   QIIME1
  SparsityDADA21
   Mothur3
   QIIME2
QuantitativeRelative abundanceBiasDADA21
   Mothur2
   QIIME3
  VarianceDADA21
   Mothur1
   QIIME1
 Differential abundanceBiasDADA23
   Mothur1
   QIIME1
  VarianceDADA21
   Mothur1
   QIIME1
  1. Pipelines are ranked (1–3) based on performance for each component of the assessment framework