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Table 1 Species used to benchmark MetaEuk

From: MetaEuk—sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics

Species

Group

Genome size (Mbp)

# scaffolds

# annotated proteins

% multi-exon proteins

GC%

MetaEuk run time against UniRef90

Schizosaccharomyces pombe

Fungi

12.59

4

5132

47

36

35 m

Acanthamoeba castellanii str. Neff

Amoebozoa

42.02

384

14,974

91

57.8

59 m

Phytomonas sp. isolate EM1

Excavata

17.78

138

6381

0

48

37 m

Babesia bigemina

Alveolates

13.84

483

5079

54

50.6

35 m

Nucleomorph of Lotharella oceanica

Rhizaria

0.68

4

668

39

32.8

24 m

Phaeodactylum tricornutum

Stramenopiles

27.45

88

10,408

46

48.8

51 m

Aspergillus nidulans

Eurotiomycetes

30.28

91

9556

88

50.3

52 m