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Table 2 Statistics of metagenomes assembled from the heavy fraction of methanol-enriched rhizosphere and unplanted soils

From: Impact of plants on the diversity and activity of methylotrophs in soil

 

Metagenome

Pea

Unplanted

Wheat

# contigs (≥ 0 bp)

1151414

1251579

981758

# contigs (≥ 1000 bp)

195697

192658

106074

Total length (≥ 0 bp)

934363676

922084398

616537133

Total length (≥ 1000 bp)

456772046

392066999

186491273

Total length

717825918

682211092

415542434

GC (%)

63.9

64.58

65.92

N501

1397

1168

916

L502

112046

145393

128331

  1. The quality of metagenomes were analysed using the program QUAST. The metagenomes were produced by shotgun sequencing of 13C-labelled DNA extracted from methanol-enriched wheat rhizosphere soil (wheat), pea plant rhizosphere soil (pea) and unplanted soil (CF) incubated from 13C-labelled methanol for 17 days
  2. 1N50 is the length for which the collection of all contigs of that length or longer covers at least half an assembly
  3. 2L50 is the number of contigs equal to or longer than N50