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Table 1 Number of OTUs in sequenced mxaF and xoxF amplicons produced from DNA extracted from soil

From: Impact of plants on the diversity and activity of methylotrophs in soil

Gene

Soil environment

Sequencing platform

Number of OTUs

xoxF1

Unplanted

Roche 454

4

xoxF2

Unplanted

Sanger

1

xoxF3

Unplanted

Sanger

6

xoxF5

Unplanted

Roche 454

13

xoxF5

Pea rhizosphere

Roche 454

19

xoxF5

Wheat rhizosphere

Roche 454

14

mxaF

Unplanted

Roche 454

4

mxaF

Pea rhizosphere

Roche 454

4

  1. Amplicons were produced from DNA samples from unplanted soil, pea rhizosphere soil and wheat rhizosphere soil and analysed by either 454 amplicon sequencing or Sanger sequencing. OTUs were produced using an 80% identity clustering threshold