23925654
|
[39]
|
Hamster (Mesocricetus auratus)
|
Opisthorchis viverrini
|
Experimental
|
Colon
|
V7-V9
|
CloVR-16S
|
RDP
|
PRJNA188112
|
MGYS00003431
|
4
|
4
|
179,193
|
189,399
|
149,780
|
157,744
|
24795483
|
[40]
|
Human (Homo sapiens)
|
Necator americanus
|
Experimental
|
Faeces
|
V1-V3 V3-V5
|
QIIME
|
Greengenes
|
PRJNA244913
|
MGYS00003191
|
8
|
8
|
106,832
|
103,428
|
86,737
|
83,780
|
26377648
|
[25]
|
Mouse (Mus musculus)
|
Nippostrongylus brasiliensis
|
Experimental
|
Small intestine
|
V3-V4
|
QIIME
|
Greengenes
|
PRJNA255974
|
MGYS00003192
|
10
|
9
|
77,836
|
71,752
|
77,836
|
71,752
|
25942314
|
[41]
|
Mouse
|
Trichuris muris
|
Experimental
|
Caecum, faeces
|
V4
|
QIIME
|
Greengenes
|
PRJEB6560
|
MGYS00001732
|
80
|
60
|
3,253,762
|
2,438,665
|
3,034,081
|
2,306,376
|
26150661
|
[35]
|
Wild yellow-necked mouse (Apodemus flavicollis)
|
Multiparasites
|
Natural
|
Stomach, small intestine, caecum, colon
|
V1-V3
|
QIIME
|
Greengenes
|
PRJEB8312
|
MGYS00003181
|
38
|
93
|
1,790,824
|
4,990,294
|
1,723,425
|
4,865,341
|
25934152
|
[42]
|
Cat (Felis catus) Dog (Canis lupus familiaris)
|
Multiparasites
|
Natural
|
Faeces
|
V4
|
MR DNA
|
Greengenes
|
PRJNA276586
|
MGYS00003432
|
14
|
48
|
587,641
|
2,002,497
|
500,349
|
1,657,742
|
27912797
|
[43]
|
Cat
|
Toxocara cati
|
Natural
|
Faeces
|
V3-V4
|
QIIME
|
Greengenes
|
PRJNA349988
|
MGYS00003433
|
21
|
24
|
4,121,930
|
6,206,792
|
3,365,062
|
4,999,740
|
27827438
|
[44]
|
Human
|
N. americanus
|
Experimental
|
Small intestine
|
V3-V4
|
QIIME
|
Greengenes
|
PRJNA316208
|
MGYS00003180
|
12
|
12
|
7,855,514
|
6,597,567
|
7,025,186
|
5,918,376
|
26853110
|
[36]
|
Alpine goat (Capra aegagrus hircus)
|
Haemonchus contortus
|
Experimental
|
Abomasum
|
V3-V4
|
QIIME
|
Greengenes
|
PRJNA518079
|
MGYS00004556
|
5
|
12
|
1,213,261
|
3,302,574
|
1,196,878
|
3,263,552
|
28892494
|
[45]
|
Human
|
Multiparasites
|
Natural
|
Faeces
|
V3-V4
|
QIIME
|
Greengenes
|
PRJEB21999
|
MGYS00003147
|
22
|
11
|
8,388,179
|
4,934,705
|
7,777,849
|
4,506,626
|
30353019
|
[46]
|
Human
|
Strongyloides stercoralis
|
Natural
|
Faeces
|
V3-V4
|
QIIME2
|
Greengenes
|
PRJEB28700
|
MGYS00003148
|
11
|
20
|
1,946,889
|
2,578,359
|
1,873,123
|
2,487,145
|
30104612
|
[28]
|
Mouse
|
Schistosoma mansoni
|
Experimental
|
Small and large intestine
|
V4
|
QIIME
|
Greengenes
|
PRJEB29315
|
MGYS00003460
|
40
|
40
|
1,405,122
|
1,369,830
|
1,405,120
|
1,369,830
|
30149004
|
[47]
|
Mouse
|
Metagonimus yokogawai
|
Experimental
|
Caecum
|
V3-V4
|
Mothur
|
EzBioCloud
|
PRJNA481634
|
MGYS00003893
|
7
|
8
|
3,335,612
|
1,405,858
|
3,194,586
|
1,351,499
|
30323795
|
[48]
|
Human
|
Clonorchis sinensis
|
Natural
|
Faeces
|
V3-V4
|
QIIME
|
Greengenes
|
PRJNA486437
|
MGYS00003894
|
42
|
47
|
5,010,319
|
5,131,918
|
4,814,736
|
4,997,256
|
30643702
|
[49]
|
Human
|
Multiparasites
|
Natural
|
Faeces
|
V4
|
Mothur
|
RDP
|
PRJNA487588
|
MGYS00003908
|
6
|
16
|
88,768
|
338,701
|
86,195
|
328,849
|