Skip to main content

Table 1 NanoARG modules, parameters, and methods

From: NanoARG: a web service for detecting and contextualizing antimicrobial resistance genes from nanopore-derived metagenomes

Module Database Method Parameters
ARGs DeepARG-db DeepARG-LS --iden 25 --prob 0.5 --cov 0.4
MGEs NCBI-NR + I-VIP Diamond --evalue 1e-5 --iden 25 --nk 15000
MRGs BacMet Diamond --evalue 1e-5 --iden 25 --nk 15000
Taxonomy Bacteria, Aarchaea, Viruses, Human Centrifuge default
Pathogens ESKAPE + WHO Pattern matching to NCBI Taxa ID –NA