Module | Database | Method | Parameters |
---|---|---|---|
ARGs | DeepARG-db | DeepARG-LS | --iden 25 --prob 0.5 --cov 0.4 |
MGEs | NCBI-NR + I-VIP | Diamond | --evalue 1e-5 --iden 25 --nk 15000 |
MRGs | BacMet | Diamond | --evalue 1e-5 --iden 25 --nk 15000 |
Taxonomy | Bacteria, Aarchaea, Viruses, Human | Centrifuge | default |
Pathogens | ESKAPE + WHO | Pattern matching to NCBI Taxa ID | –NA |