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Table 3 Quality of results based on simulated data

From: NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language

Environment

Tool

Mean

Std. dev.

Human gut

NGLess

88.44

2.07

MOCAT2

87.32

2.04

bwa/htseq-count

85.96

1.84

Marine

NGLess

82.26

6.29

MOCAT2

83.07

6.42

bwa/htseq-count

82.46

6.32

  1. Shown are the average and std. dev. (over 8 simulations for each environment) of the Spearman rho between the output of each tool and the ground truth
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Microbiome

ISSN: 2049-2618

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