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Table 2 Overview of the 19 recovered MAGs (bins)

From: Closely-related Photobacterium strains comprise the majority of bacteria in the gut of migrating Atlantic cod (Gadus morhua)

Sample ID

MAXBIN

BUSCO

CheckM

SENDSEKTCH

Bin ID

Rel abund1 (%)

Contigs (n)

Comp2 (%)

Genome size (bp)

GC content (%)

Comp2 (%)

Cont3 (%)

Comp2 (%)

Cont3 (%)

Bacteria IDs

KWID (%)

KID (%)

MBRG-29

1

63.7

803

96.3

3,744,967

39.9

91.20

14.20

96.46

34.53

P. carnosum/P. iliopiscarium

64.65/31.51

53.05/17.56

2

14.2

1615

86.0

6,851,229

39.5

79.10

3.40

90.29

36.35

P. phosphoreum/P. iliopiscarium

32.75/9.44

14.93/9.36

3

12.8

1495

76.6

2,903,426

33.1

53.40

1.40

74.00

20.79

P. carnosum/P. iliopiscarium

3.23/1.69

2.06/0.73

4

6.0

1617

51.4

3,222,164

46.4

36.50

6.10

38.13

8.39

A. logei/P. iliopiscarium

1.36/1.62

0.94/ 0.78

5

3.3

4368

92.5

10,028,463

39.0

85.80

15.50

96.08

71.43

A. salmonicida/A. logei

66.92/49.50

28.22/23.22

MBRG-30

1

91.6

682

97.2

5,125,278

39.9

97.30

5.40

97.78

12.42

P. iliopiscarium/P. carnosum

74.91/21.50

56.58/19.27

2

8.4

30,288

50.5

48,009,385

46.2

39.20

2.70

63.83

18.65

A. salmonicida 2FI238/A. logei

34.35/26.11

3.07/2.60

MBRG-35

1

12.3

181

89.7

2,762,496

40.7

93.90

2.00

70.29

0.92

P. iliopiscarium/P. carnosum

77.02/21.72

31.56/13.18

2

6.5

400

96.3

4,937,125

38.8

87.90

3.40

95.67

17.85

P. iliopiscarium/P. carnosum

33.45/8.50

24.40/7.89

3

2.1

496

78.5

1,221,145

31.2

60.80

0.0

78.28

1.12

P. iliopiscarium/P .carnosum

3.49/0.86

0.65/0.24

4

1.1

974

62.6

1,948,287

34.4

39.20

11.50

60.05

28.35

P. carnosum/P. iliopiscarium

0.80/0.72

0.34/0.21

5

0.5

5824

83.2

9,939,730

41.7

63.50

11.50

79.55

41.82

A. wodanis/A. sp 1S128

6.71/6.56

5.75/2.92

MBRG-36

1

58.0

59

78.5

1,315,797

41.9

80.40

0.0

48.40

0.16

P. phosphoreum/P. sp

96.24/9.85

8.76/3.01

2

1.6

544

61.7

3,480,193

32.3

43.90

0.70

44.64

0.10

P. carnosum/P. iliopiscarium

3.96/2.31

0.95/0.38

3

1.4

1394

94.0

4,378,218

38.1

81.10

11.50

93.10

42.38

P. iliopiscarium/P. carnosum

1.36/1.01

0.88/0.96

4

1.2

1348

86.9

3,322,850

45.4

70.90

8.10

81.40

9.39

P. iliopiscarium/P. phosphoreum

1.19/1.00

0.50/0.27

5

1.1

938

73.8

2,776,503

42.7

64.20

9.50

84.89

19.86

A. salmonicida/A. logei

0.32/0.25

0.21/0.15

MBRG-38

1

80.1

513

96.3

3,685,334

40.3

86.40

20.90

96.49

43.52

P. carnosum/P. iliopiscarium

64.15/17.82

34.85/14.27

MBRG-44

1

75.4

109

85.0

2,061,831

40.6

87.80

0.0

63.32

0.16

P. iliopiscarium/P. carnosum

85.02/22.88

25.91/10.28

  1. The information for each of the obtained MAGs include the relative abundance of the bins; number of contigs; genome size; GC content; completeness and contamination of assemblies using Maxbin, BUSCO, and CheckM; bacterial ID from sendsketch (i.e., the two closest matches in the RefSeq database); % KID (kmers that match between the query and the reference); and KWID (% KID that was normalized to the genome size)
  2. 1The abundance of bins within a sample by Maxbin
  3. 2The completeness of genome by Maxbin, BUSCO, and CheckM.
  4. 3The contamination score using BUSCO and CheckM for each MAGs
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