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Table 2 Overview of the 19 recovered MAGs (bins)

From: Closely-related Photobacterium strains comprise the majority of bacteria in the gut of migrating Atlantic cod (Gadus morhua)

Sample ID MAXBIN BUSCO CheckM SENDSEKTCH
Bin ID Rel abund1 (%) Contigs (n) Comp2 (%) Genome size (bp) GC content (%) Comp2 (%) Cont3 (%) Comp2 (%) Cont3 (%) Bacteria IDs KWID (%) KID (%)
MBRG-29 1 63.7 803 96.3 3,744,967 39.9 91.20 14.20 96.46 34.53 P. carnosum/P. iliopiscarium 64.65/31.51 53.05/17.56
2 14.2 1615 86.0 6,851,229 39.5 79.10 3.40 90.29 36.35 P. phosphoreum/P. iliopiscarium 32.75/9.44 14.93/9.36
3 12.8 1495 76.6 2,903,426 33.1 53.40 1.40 74.00 20.79 P. carnosum/P. iliopiscarium 3.23/1.69 2.06/0.73
4 6.0 1617 51.4 3,222,164 46.4 36.50 6.10 38.13 8.39 A. logei/P. iliopiscarium 1.36/1.62 0.94/ 0.78
5 3.3 4368 92.5 10,028,463 39.0 85.80 15.50 96.08 71.43 A. salmonicida/A. logei 66.92/49.50 28.22/23.22
MBRG-30 1 91.6 682 97.2 5,125,278 39.9 97.30 5.40 97.78 12.42 P. iliopiscarium/P. carnosum 74.91/21.50 56.58/19.27
2 8.4 30,288 50.5 48,009,385 46.2 39.20 2.70 63.83 18.65 A. salmonicida 2FI238/A. logei 34.35/26.11 3.07/2.60
MBRG-35 1 12.3 181 89.7 2,762,496 40.7 93.90 2.00 70.29 0.92 P. iliopiscarium/P. carnosum 77.02/21.72 31.56/13.18
2 6.5 400 96.3 4,937,125 38.8 87.90 3.40 95.67 17.85 P. iliopiscarium/P. carnosum 33.45/8.50 24.40/7.89
3 2.1 496 78.5 1,221,145 31.2 60.80 0.0 78.28 1.12 P. iliopiscarium/P .carnosum 3.49/0.86 0.65/0.24
4 1.1 974 62.6 1,948,287 34.4 39.20 11.50 60.05 28.35 P. carnosum/P. iliopiscarium 0.80/0.72 0.34/0.21
5 0.5 5824 83.2 9,939,730 41.7 63.50 11.50 79.55 41.82 A. wodanis/A. sp 1S128 6.71/6.56 5.75/2.92
MBRG-36 1 58.0 59 78.5 1,315,797 41.9 80.40 0.0 48.40 0.16 P. phosphoreum/P. sp 96.24/9.85 8.76/3.01
2 1.6 544 61.7 3,480,193 32.3 43.90 0.70 44.64 0.10 P. carnosum/P. iliopiscarium 3.96/2.31 0.95/0.38
3 1.4 1394 94.0 4,378,218 38.1 81.10 11.50 93.10 42.38 P. iliopiscarium/P. carnosum 1.36/1.01 0.88/0.96
4 1.2 1348 86.9 3,322,850 45.4 70.90 8.10 81.40 9.39 P. iliopiscarium/P. phosphoreum 1.19/1.00 0.50/0.27
5 1.1 938 73.8 2,776,503 42.7 64.20 9.50 84.89 19.86 A. salmonicida/A. logei 0.32/0.25 0.21/0.15
MBRG-38 1 80.1 513 96.3 3,685,334 40.3 86.40 20.90 96.49 43.52 P. carnosum/P. iliopiscarium 64.15/17.82 34.85/14.27
MBRG-44 1 75.4 109 85.0 2,061,831 40.6 87.80 0.0 63.32 0.16 P. iliopiscarium/P. carnosum 85.02/22.88 25.91/10.28
  1. The information for each of the obtained MAGs include the relative abundance of the bins; number of contigs; genome size; GC content; completeness and contamination of assemblies using Maxbin, BUSCO, and CheckM; bacterial ID from sendsketch (i.e., the two closest matches in the RefSeq database); % KID (kmers that match between the query and the reference); and KWID (% KID that was normalized to the genome size)
  2. 1The abundance of bins within a sample by Maxbin
  3. 2The completeness of genome by Maxbin, BUSCO, and CheckM.
  4. 3The contamination score using BUSCO and CheckM for each MAGs