Fig. 6
From: Culture-enriched human gut microbiomes reveal core and accessory resistance genes
Comparison of resistance gene content associated with Escherichia coli contigs and genes found in 3346 E. coli whole genome sequences. The color of the heatmap indicates the copy number of each resistance gene. The upper part of the figure presents the distribution of resistance genes in whole genomes. The lower part of the figure shows the distribution of the same genes in contigs derived from CIM or CEM and identified as E. coli. The barplot on the right side shows the sum of the length of the contigs associated with E. coli in each CIM or CEM. The order of the genes is the same as in Fig. 5, meaning that the figure also includes E. cloacae resistance genes which may be absent from E. coli genomes, CIM, or CEM samples. The number after P identifies the participant (n = 24) and the number after J identifies the time point of sample collection (0, 7, or 90 days). Only positive samples are shown in the figure