Table 1 Summary of results
From: Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data
(a) | (b) | (c) | (d) | (e) | (f) | (g) | (h) | (i) | (j) | |
|---|---|---|---|---|---|---|---|---|---|---|
DIAMOND+MEGAN | Unicycler | Total | Aligned | Average | CheckM | Prokka | ||||
taxonomic bin | contigs | (Mb) | (Mb) | coverage | Complete. | contam. | rRNA | tRNA | CDS | |
High-quality draft genomes: | ||||||||||
B1 | Bacteroidetes bacterium OLB12 | 1 | 4.2 | 3.5 | 57.3 | 95% | 0.1% | 6 | 39 | 4,163 |
B2 | Candidatus Accumulibacter SK-02 | 1 | 5.2 | 4.1 | 384.2 | 94% | 0.6% | 4 | 53 | 4,915 |
B3 | Chlamydiia (class) | 1 | 2.8 | 1.8 | 48.8 | 94% | 2% | 6 | 39 | 3,387 |
B4 | Gammaproteobacteria (class) | 43 | 4.7 | 3.0 | 93% | 2% | 6 | 52 | 4,833 | |
-Longest contig | 2.7 | 1.6 | 25.1 | 93% | 0.2% | 3 | 40 | 3,359 | ||
B5 | Bacteroidetes bacterium OLB8 | 1 | 3.8 | 3.0 | 52.1 | 93% | 1% | 6 | 37 | 3,394 |
B6 | Rhodospirillales (order) | 1 | 4.4 | 3.0 | 29.5 | 92% | 0.5% | 3 | 47 | 4,015 |
B7 | Chlorobi bacterium OLB5 | 1 | 3.5 | 2.5 | 38.7 | 88% | 1% | 3 | 41 | 4,131 |
Medium quality draft genomes: | ||||||||||
B8 | Thauera (genus) | 25 | 4.6 | 4.0 | 89% | 4% | 12 | 64 | 4,040 | |
-Longest contig | 0.8 | 0.7 | 32.7 | 14% | 0% | 0 | 5 | 672 | ||
B9 | Sphingobacteriales bacterium 44-15 | 59 | 3.2 | 2.8 | 76% | 1% | 2 | 17 | 2,953 | |
-Longest contig | 0.2 | 0.1 | 10.2 | 0% | 0% | 0 | 0 | 172 | ||
B10 | Bacteroidetes (phylum) | 43 | 3.9 | 2.6 | 72% | 7% | 1 | 12 | 1,997 | |
-Longest contig | 1.2 | 0.8 | 14.1 | 32% | 0% | 0 | 3 | 807 | ||
B11 | Candidatus Contendobacter B J11 | 39 | 2.5 | 2.0 | 59% | 9% | 2 | 37 | 2,668 | |
-Longest contig | 0.3 | 0.3 | 15.4 | 19% | 0% | 0 | 7 | 295 | ||
Low quality draft genomes: | ||||||||||
B12 | Betaproteobacteria (class) | 111 | 6.6 | 5.5 | 89% | 79% | 6 | 71 | 4,655 | |
-Longest contig | 0.4 | 0.3 | 37.1 | 10% | 0% | 0 | 1 | 372 | ||
B13 | Nitrospira (genus) | 34 | 4.2 | 3.7 | 83% | 13% | 0 | 6 | 563 | |
-Longest contig | 1.1 | 0.9 | 17.6 | 27% | 0% | 0 | 2 | 99 | ||
B14 | Chloroflexi (phylum) | 151 | 5.4 | 4.3 | 71% | 29% | 0 | 11 | 3,565 | |
-Longest contig | 0.2 | 0.2 | 13.3 | 8% | 0% | 0 | 1 | 86 | ||