Fig. 6

Overview of the concordance score for LR contigs, on the one hand, and SR-bins and reference genomes, on the other. The x axis shows the length of each LR contig, with the position of each tagged with a tick on the axis; the y axis shows the value of concordance score κ, and data points represent pairs of LR chromosomes and SR bins, or references genomes. Selected pairs with high concordance score are labeled with “ 〈LR-chromosome.id〉−〈SR-bin.id〉” for comparisons to SR-bins or “ 〈LR-chromosome.id〉−〈GCA_id〉” for comparisons to references. Within each set of the seven LR chromosome alignments, the pair with the maximum concordance score is shown in red. All LR chromosomes have highly concordant counterpart SR-bins, with the exception of LR chromosome 5. Further details on individual LR chromosomes are reported in Additional file 10: Figure S2