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Fig. 4 | Microbiome

Fig. 4

From: Dynamic linear models guide design and analysis of microbiota studies within artificial human guts

Fig. 4

Sub-daily microbiota dynamics within the artificial intestine. a An annotated phylogenetic tree defining PhILR balance between the phyla Fusobacteria, Proteobacteria, and Bacteroidetes. The balance reflects the scaled log-ratio of the geometric mean relative abundance of families in the Bacteroidetes phyla (numerator, +) to the geometric mean relative abundance of families in the Fusobacteria and Proteobacteria phyla (denominator, −) (“Methods” section). b Mean, 50%, and 95% credible interval of posterior distribution for θ (microbial dynamics in absence of technical variation) for the PhILR balance defined in (a). The full list of PhILR balances and corresponding posterior estimates are shown in Additional files 7 and 8

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