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Table 2 Examples of unicellular eukaryotes and helminthes identified in biological and environmental samples

From: A high-throughput sequencing assay to comprehensively detect and characterize unicellular eukaryotes and helminths from biological and environmental samples

Primer

Known parasite pool

Stool pools

Soil samples

Water samples

Trap contents

Amoebozoa

Dictyostelium discoideum (100)

Endolimax nana (87)

Sorosphaerula veronicae (100)

Lecythium hyalinum (100)

 
  

Entamoeba hartmanni (100)

Filamoeba nolandi (97)

Phalansterium sp. (84)

 
  

Entamoeba dispar (100)

Dictyamoeba vorax (89)

Stramenopile sp. (99)

 
   

Polymyxa graminis (99)

Kraken carinae (98)

 
   

Cercozoa sp. (97)

Leptophryidae sp. (97)

 

Apicomplexa B

Cryptosporidium sp. (100)

   

Plasmodium gallinaceum (98)

     

Plasmodium cathemerium (99)

     

Plasmodium juxtanucleare (94)

Apicomplexa C

Theileria parva (100)

 

Paraschneideria metamorphosa (97)

  
 

Cryptosporidium sp. (100)

    

Blastocystis

 

Blastocystis sp. (100)

   

Diplomonadida

Giardia intestinalis (100)

Enteromonas hominis (100)

 

Hexamita inflata (97)

 
  

Giardia intestinalis (100)

 

Hexamita nelsoni (94)

 
    

Trepomonas steinii (96)

 
    

Trepomonas sp. (94)

 
    

Hexamita inflata (99)

 

Kinetoplastida

Leishmania sp. (100)

 

Rhynchomonas nasuta (94)

Rhynchomonas nasuta (100)

Crithidia dedva (93)

 

Trypanosoma brucei (100)

 

Bodonidae sp./Neobodo designis (79)

Neobodo designis (90)

Crithidia sp./Leptomonas sp./Wallaceina sp. (99)

   

Cryptaulax sp. (95)

Procryptobia sorokini (99)

Herpetomonas sp./Herpetomonas isaaci (89)

   

Phanerobia pelophila/Dimastigella trypaniformis (93)

Parabodo caudatus (99)

 
   

Dimastigella trypaniformis (98)

Bodo saltans (100)

 

Microsporidia

Encephalitozoon cuniculi (100)

Enterocytozoon bieneusi (100)

 

Microsporidium sp. (95)

Pleistophora sp. (100)

     

Microsporidium sp. (98)

Nematoda A

Acanthocheilonema viteae (100)

Enterobius vermicularis (100)

Mesocriconema sp. (100)

 

Abursanema iranicum (95)

   

Filenchus sp./Tylenchidae sp. (100)

  

Nematoda B

Acanthocheilonema viteae (100)

   

Abursanema iranicum/Sphaerularia vespae (92)

Nematoda C

  

Diphtherophora sp. (99)

 

Mermithidae sp. (92)

   

Prismatolaimus sp. (100)

  
   

Alaimus parvus (99)

  
   

Pellioditis sp. (99)

  
   

Oscheius sp. (100)

  

Platyhelminthes

Schistosoma sp. (99)

  

Cura pinguis (98)

 
    

Girardia tigrina (92)

 
  1. The table shows, for each type of sample and each primer pair, up to five species best matching DNA sequences amplified (and the percentage identify with the most similar NCBI sequence). When one DNA sequence matched equally well multiple genera, all those are indicated. The full results are presented in Additional file 1: Table S4