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Table 3 Taxonomic classification of BEI

From: Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes

Centroids full-length Centroids v3-v5 Clustered from V3-V5 truncated reads (Top 19) Mothur/Silva full-length (Top 19)
Species Genus conf Species conf Species Genus conf Species conf Species Genus conf Species conf Genus Genus conf
Acinetobacter_baumannii 0.98 0.94 Acinetobacter_baumannii 0.88 0.42 Acinetobacter_baumannii 0.8784 0.42 Acinetobacter 100
Actinomyces_odontolyticus 0.99 0.94 Actinomyces_odontolyticus 0.97 0.62 Actinomyces_odontolyticus 0.9728 0.62 Actinomyces 100
Bacillus_anthracis 0.99 0.49 Bacillus_cereus 0.96 0.42 Bacillus_cereus 0.963 0.31 Bacillus 100
Bacteroides_vulgatus 0.99 0.94 Bacteroides_vulgatus 0.98 0.90 Bacteroides_vulgatus 0.9847 0.90 Bacteroides 100
Clostridium_beijerinckii 0.99 0.72 Clostridium_roseum 0.97 0.42 Clostridium_roseum 0.965 0.31 Clostridium_sensu_stricto 100
Deinococcus_radiodurans 0.99 0.94 Deinococcus_radiodurans 1.00 0.90 Deinococcus_radiodurans 0.9994 0.90 Deinococcus 100
Enterococcus_faecalis 0.99 0.94 Enterococcus_faecalis 0.88 0.83 Enterococcus_faecalis 0.8784 0.83 Enterococcus 100
Shigella_flexneri 0.69 0.49 Shigella_flexneri 0.67 0.42 Shigella_flexneri 0.6072 0.31 Escherichia_Shigella 100
Helicobacter_pylori 0.99 0.93 Helicobacter_pylori 0.98 0.90 Helicobacter_pylori 0.9787 0.90 Helicobacter 100
Lactobacillus_gasseri 0.99 0.72 Lactobacillus_gasseri 0.97 0.42 Lactobacillus_gasseri 0.9728 0.42 Lactobacillus 100
Listeria_monocytogenes 0.99 0.72 Listeria_ivanovii 0.96 0.42 Listeria_ivanovii 0.961 0.31 Listeria 100
Neisseria_meningitidis 0.97 0.93 Neisseria_meningitidis 0.95 0.62 Neisseria_meningitidis 0.9533 0.62 Neisseria 100
Propionibacterium_acnes 0.97 0.96 Propionibacterium_acnes 0.97 0.91 Propionibacterium_acnes 0.965 0.91 Propionibacterium 100
Pseudomonas_aeruginosa 0.97 0.93 Pseudomonas_aeruginosa 0.93 0.62 Pseudomonas_aeruginosa 0.9329 0.62 Pseudomonas 100
Rhodobacter_sphaeroides 0.97 0.60 Rhodobacter_sphaeroides 0.92 0.42 Rhodobacter_sphaeroides 0.9228 0.31 Rhodobacter 100
Staphylococcus_epidermidis 0.99 0.72 Staphylococcus_epidermidis 0.67 0.42 Staphylococcus_epidermidis 0.6661 0.31 Staphylococcus 100
Streptococcus_agalactiae 0.99 0.95 Streptococcus_agalactiae 0.97 0.90 Streptococcus_agalactiae 0.9728 0.90 Streptococcus 100
Streptococcus_mutans 0.99 0.95 Streptococcus_mutans 0.98 0.90 Streptococcus_mutans 0.9768 0.90 Streptococcus 100
Streptococcus_pneumoniae 0.99 0.49 Streptococcus_pneumoniae 0.98 0.42 Streptococcus_pneumoniae 0.9768 0.42 Streptococcus 100
  1. Classification results from the BEI mock community. The performance of MCSMRT FL16S centroid OTU assignments (column 1), centroids truncated to V3-V5 (column 2), top 19 centroids found when clustering V3-V5 truncation reads (column 3), and the top 19 OTUs identified using Mothur/Silva with FL16S reads (column 4)