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Table 1 Summary of reference genomes used for mapping

From: Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches

Organism name

Sequence ID

Accession

Reference

Acyrthosiphon pisum

Genome

SAMN00000061

[85]

Buchnera aphidicola

Genome APS

BA000003.2

[86]

Plasmid pLeu

AP001071.1

[86]

Plasmid pTrp

AP001070.1

[86]

Hamiltonella defensa 5AT

Genome 5AT

CP001277.1

[87]

Plasmid pHD5AT

CP001278.1

[87]

Phage APSE1

AF157835.1

[88]

Phage APSE3

EU794053.1

[46]

Phage APSE4

EU794051.1

[46]

Phage APSE5

EU794050.1

[46]

Phage APSE6

EU794054.1

[46]

Phage APSE7

EU794052.1

[46]

Regiella insecticola 5.15

Genome

AGCA01000000

[89]

 

Plasmid pRILSR1

CM000957.1

[90]

Serratia symbiotica strain Tucson

Genome

GCA_000186485.2

[91]

Spiroplasma sp.

Genome

Upon request

[42]

Fukatsuia symbiotica

Genome

GCA_900128755.1

[44]

Rickettsiella viridis

Genome

AP018005.1

[92]

Rickettsia sp.

Genome

Upon request

This paper

plasmid pREIS3

CM000771.1

plasmid pRF

GQ329881.1

plasmid pRAF

CP001613.1

Wolbachia sp. wRi

Genome

GCA_000022285.1

[93]