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Table 3 List of CAZymes implicated in lignocellulose degradation in the A. vulgare holobiont. Presented are the total numbers of CAZy modules for each family in the host reference transcriptome and in the metagenome assemblies

From: Lignocellulose degradation at the holobiont level: teamwork in a keystone soil invertebrate

CAZy family

Known activities

Host

Metagenome assemblies

Field

Lab

Total

LMEs

 

15

4

25

29

 AA1

Laccase

2

–

–

–

 AA2

Manganese peroxidase; versatile peroxidase; lignin peroxidase

–

–

16

16

 AA3

Cellobiose dehydrogenase

13

4

9

13

Hemicellulases

121

86

226

321

 CE1

Acetyl xylan esterase; feruloyl esterase

33

29

61

90

 CE3

Acetyl xylan esterase

19

7

19

26

 CE4

Acetyl xylan esterase

13

23

32

55

 CE5

Acetyl xylan esterase

–

1

1

2

 CE6

Acetyl xylan esterase

–

–

2

2

 CE7

Acetyl xylan esterase

–

4

1

5

 CE12

Acetyl xylan esterase

2

1

5

6

 GH2

β-galactosidase; β-mannosidase; α-L-arabinofuranosidase

14

–

12

12

 GH4

α-galactosidase

–

1

38

39

 GH10

Endo-1,4-β-xylanase

–

1

–

1

 GH11

Endo-β-1,4-xylanase

–

–

1

1

 GH16

Xyloglucanase

1

2

2

4

 GH27

α-galactosidase

5

–

–

–

 GH29

α-L-fucosidase

18

2

–

2

 GH31

α-galactosidase; α-xylosidase

–

6

23

29

 GH35

β-galactosidase

12

–

–

–

 GH36

α-galactosidase

–

3

2

5

 GH39

β-xylosidase

–

–

3

3

 GH42

β-galactosidase

–

7

2

9

 GH43

β-xylosidase; α-L-arabinofuranosidase; arabinanase; xylanase

–

2

15

17

 GH53

Endo-β-1,4-galactanase

–

–

2

2

 GH57

α-galactosidase

–

2

–

2

 GH113

β-mannanase

–

2

3

5

 GH116

β-xylosidase

2

–

–

–

 GH120

β-xylosidase

2

–

1

1

 GH134

Endo-β-1,4-mannanase

–

–

3

3

Hemicellulases and/or cellulases

65

42

114

156

 GH1

β-glucosidase; β-galactosidase; exo-β-1,4-glucanase; β-mannosidase; β-xylosidase

–

4

53

57

 GH3

β-glucosidase; exo-β-1,4-glucanase; xylan 1,4-β-xylosidase; α-L-arabinofuranosidase

–

15

28

43

 GH5

Endo-β-1,4-glucanase; β-glucosidase; exo-β-1,4-glucanase; endo-β-1,4-xylanase; β-mannosidase; endo-β-1,4-mannosidase; cellobiohydrolase

11

14

5

19

 GH8

Endo-β-1,4-glucanase; endo-1,4-β-xylanase

–

–

21

21

 GH9

Endo-β-1,4-glucanase; β-glucosidase; exo-β-1,4-glucanase; cellobiohydrolase

14

–

2

2

 GH30

β-glucosidase; endo-β-1,4-xylanase; β-xylosidase

39

6

–

6

 GH51

Endo-β-1,4-glucanase; endo-β-1,4-xylanase; β-glucosidase; β-xylosidase; α-L-arabinofuranosidase

–

1

–

1

 GH74

Endo-β-1,4-glucanase; xyloglucanase

1

2

2

4

 GH94

Cellobiose phosphorylase

–

–

3

3

Lignocellulose-binding modules

57

519

356

875

 CBM1

Cellulose-binding

–

–

2

2

 CBM2

Cellulose and xylan binding

–

4

2

6

 CBM3

Cellulose-binding

–

3

1

4

 CBM4

Cellulose, xylan, β-1,3-glucan, and β-1,3-1,4-glucan binding

–

1

1

2

 CBM6

Cellulose-binding

–

3

1

4

 CBM8

Cellulose-binding

–

–

1

1

 CBM10

Cellulose-binding

–

1

1

2

 CBM13

Xylan-binding

16

3

1

4

 CBM15

Xylan and xylooligosaccharides binding

–

2

–

2

 CBM16

Cellulose and glucomannan binding

–

–

2

2

 CBM22

Xylan-binding

–

2

2

4

 CBM23

Mannan-binding

1

1

–

1

 CBM27

Mannan-binding

–

1

2

3

 CBM29

Mannan and glucomannan binding

–

2

5

7

 CBM30

Cellulose-binding

–

6

5

11

 CBM31

β-1,3-xylan-binding

1

4

5

9

 CBM32

Galactose-binding

19

9

42

51

 CBM35

Xylan, mannans and β-galactan binding

–

4

2

6

 CBM36

Xylans and xylooligosaccharides binding

–

4

2

6

 CBM37

Cellulose and xylan binding

8

3

8

11

 CBM39

β-1,3-glucan-binding

–

4

3

7

 CBM42

Arabinofuranose-binding

–

1

1

2

 CBM43

β-1,3-glucan-binding

–

4

1

5

 CBM44

Cellulose and xyloglucan binding

–

8

8

16

 CBM46

Cellulose-binding

–

2

4

6

 CBM47

Fucose-binding

8

401

228

629

 CBM49

Crystalline cellulose binding

–

5

4

9

 CBM51

Galactose-binding

–

4

1

5

 CBM54

Xylan-binding

–

6

1

7

 CBM56

β-1,3-glucan-binding

1

–

1

1

 CBM62

Xyloglucan, arabinogalactan, and galactomannan binding

–

1

–

1

 CBM63

Cellulose-binding

–

2

2

4

 CBM64

Cellulose-binding

–

5

2

7

 CBM67

L-rhamnose-binding

3

4

6

10

 CBM72

Cellulose, β-1,3-glucans, xylan, and β-mannan binding

–

5

2

7

 CBM76

Xyloglucan, glucomannan, and β-glucan binding

–

1

1

2

 CBM78

β-1,4-glucans and xyloglucan binding

–

1

2

3

 CBM79

β-glucans-binding

–

3

–

3

 CBM80

Xyloglucan, glucomannan, and galactomannan binding

–

9

4

13