From: Lignocellulose degradation at the holobiont level: teamwork in a keystone soil invertebrate
CAZy family | Known activities | Host | Metagenome assemblies | ||
---|---|---|---|---|---|
Field | Lab | Total | |||
LMEs | Â | 15 | 4 | 25 | 29 |
 AA1 | Laccase | 2 | – | – | – |
 AA2 | Manganese peroxidase; versatile peroxidase; lignin peroxidase | – | – | 16 | 16 |
 AA3 | Cellobiose dehydrogenase | 13 | 4 | 9 | 13 |
Hemicellulases | 121 | 86 | 226 | 321 | |
 CE1 | Acetyl xylan esterase; feruloyl esterase | 33 | 29 | 61 | 90 |
 CE3 | Acetyl xylan esterase | 19 | 7 | 19 | 26 |
 CE4 | Acetyl xylan esterase | 13 | 23 | 32 | 55 |
 CE5 | Acetyl xylan esterase | – | 1 | 1 | 2 |
 CE6 | Acetyl xylan esterase | – | – | 2 | 2 |
 CE7 | Acetyl xylan esterase | – | 4 | 1 | 5 |
 CE12 | Acetyl xylan esterase | 2 | 1 | 5 | 6 |
 GH2 | β-galactosidase; β-mannosidase; α-L-arabinofuranosidase | 14 | – | 12 | 12 |
 GH4 | α-galactosidase | – | 1 | 38 | 39 |
 GH10 | Endo-1,4-β-xylanase | – | 1 | – | 1 |
 GH11 | Endo-β-1,4-xylanase | – | – | 1 | 1 |
 GH16 | Xyloglucanase | 1 | 2 | 2 | 4 |
 GH27 | α-galactosidase | 5 | – | – | – |
 GH29 | α-L-fucosidase | 18 | 2 | – | 2 |
 GH31 | α-galactosidase; α-xylosidase | – | 6 | 23 | 29 |
 GH35 | β-galactosidase | 12 | – | – | – |
 GH36 | α-galactosidase | – | 3 | 2 | 5 |
 GH39 | β-xylosidase | – | – | 3 | 3 |
 GH42 | β-galactosidase | – | 7 | 2 | 9 |
 GH43 | β-xylosidase; α-L-arabinofuranosidase; arabinanase; xylanase | – | 2 | 15 | 17 |
 GH53 | Endo-β-1,4-galactanase | – | – | 2 | 2 |
 GH57 | α-galactosidase | – | 2 | – | 2 |
 GH113 | β-mannanase | – | 2 | 3 | 5 |
 GH116 | β-xylosidase | 2 | – | – | – |
 GH120 | β-xylosidase | 2 | – | 1 | 1 |
 GH134 | Endo-β-1,4-mannanase | – | – | 3 | 3 |
Hemicellulases and/or cellulases | 65 | 42 | 114 | 156 | |
 GH1 | β-glucosidase; β-galactosidase; exo-β-1,4-glucanase; β-mannosidase; β-xylosidase | – | 4 | 53 | 57 |
 GH3 | β-glucosidase; exo-β-1,4-glucanase; xylan 1,4-β-xylosidase; α-L-arabinofuranosidase | – | 15 | 28 | 43 |
 GH5 | Endo-β-1,4-glucanase; β-glucosidase; exo-β-1,4-glucanase; endo-β-1,4-xylanase; β-mannosidase; endo-β-1,4-mannosidase; cellobiohydrolase | 11 | 14 | 5 | 19 |
 GH8 | Endo-β-1,4-glucanase; endo-1,4-β-xylanase | – | – | 21 | 21 |
 GH9 | Endo-β-1,4-glucanase; β-glucosidase; exo-β-1,4-glucanase; cellobiohydrolase | 14 | – | 2 | 2 |
 GH30 | β-glucosidase; endo-β-1,4-xylanase; β-xylosidase | 39 | 6 | – | 6 |
 GH51 | Endo-β-1,4-glucanase; endo-β-1,4-xylanase; β-glucosidase; β-xylosidase; α-L-arabinofuranosidase | – | 1 | – | 1 |
 GH74 | Endo-β-1,4-glucanase; xyloglucanase | 1 | 2 | 2 | 4 |
 GH94 | Cellobiose phosphorylase | – | – | 3 | 3 |
Lignocellulose-binding modules | 57 | 519 | 356 | 875 | |
 CBM1 | Cellulose-binding | – | – | 2 | 2 |
 CBM2 | Cellulose and xylan binding | – | 4 | 2 | 6 |
 CBM3 | Cellulose-binding | – | 3 | 1 | 4 |
 CBM4 | Cellulose, xylan, β-1,3-glucan, and β-1,3-1,4-glucan binding | – | 1 | 1 | 2 |
 CBM6 | Cellulose-binding | – | 3 | 1 | 4 |
 CBM8 | Cellulose-binding | – | – | 1 | 1 |
 CBM10 | Cellulose-binding | – | 1 | 1 | 2 |
 CBM13 | Xylan-binding | 16 | 3 | 1 | 4 |
 CBM15 | Xylan and xylooligosaccharides binding | – | 2 | – | 2 |
 CBM16 | Cellulose and glucomannan binding | – | – | 2 | 2 |
 CBM22 | Xylan-binding | – | 2 | 2 | 4 |
 CBM23 | Mannan-binding | 1 | 1 | – | 1 |
 CBM27 | Mannan-binding | – | 1 | 2 | 3 |
 CBM29 | Mannan and glucomannan binding | – | 2 | 5 | 7 |
 CBM30 | Cellulose-binding | – | 6 | 5 | 11 |
 CBM31 | β-1,3-xylan-binding | 1 | 4 | 5 | 9 |
 CBM32 | Galactose-binding | 19 | 9 | 42 | 51 |
 CBM35 | Xylan, mannans and β-galactan binding | – | 4 | 2 | 6 |
 CBM36 | Xylans and xylooligosaccharides binding | – | 4 | 2 | 6 |
 CBM37 | Cellulose and xylan binding | 8 | 3 | 8 | 11 |
 CBM39 | β-1,3-glucan-binding | – | 4 | 3 | 7 |
 CBM42 | Arabinofuranose-binding | – | 1 | 1 | 2 |
 CBM43 | β-1,3-glucan-binding | – | 4 | 1 | 5 |
 CBM44 | Cellulose and xyloglucan binding | – | 8 | 8 | 16 |
 CBM46 | Cellulose-binding | – | 2 | 4 | 6 |
 CBM47 | Fucose-binding | 8 | 401 | 228 | 629 |
 CBM49 | Crystalline cellulose binding | – | 5 | 4 | 9 |
 CBM51 | Galactose-binding | – | 4 | 1 | 5 |
 CBM54 | Xylan-binding | – | 6 | 1 | 7 |
 CBM56 | β-1,3-glucan-binding | 1 | – | 1 | 1 |
 CBM62 | Xyloglucan, arabinogalactan, and galactomannan binding | – | 1 | – | 1 |
 CBM63 | Cellulose-binding | – | 2 | 2 | 4 |
 CBM64 | Cellulose-binding | – | 5 | 2 | 7 |
 CBM67 | L-rhamnose-binding | 3 | 4 | 6 | 10 |
 CBM72 | Cellulose, β-1,3-glucans, xylan, and β-mannan binding | – | 5 | 2 | 7 |
 CBM76 | Xyloglucan, glucomannan, and β-glucan binding | – | 1 | 1 | 2 |
 CBM78 | β-1,4-glucans and xyloglucan binding | – | 1 | 2 | 3 |
 CBM79 | β-glucans-binding | – | 3 | – | 3 |
 CBM80 | Xyloglucan, glucomannan, and galactomannan binding | – | 9 | 4 | 13 |