Table 2 Metrics of the A. vulgare metagenome assemblies
From: Lignocellulose degradation at the holobiont level: teamwork in a keystone soil invertebrate
Origin | N | Gender | Wolbachia | Tissues | No. of reads | No. of contigs | N50 | % reads used | No. of predicted ORFs1 | No. of LDC* |
|---|---|---|---|---|---|---|---|---|---|---|
Laboratory | 7 | M | – | Tissue samples* | 93,016,946 | 545,551 | 575 | 79.3 | 173,550 | 1 |
Laboratory | 7 | M | – | Hindgut | 151,479,496 | 862,485 | 745 | 85.2 | 300,044 | 1 |
Laboratory | 7 | M | – | Gut content | 44,025,120 | 181,858 | 490 | 60.5 | 77,326 | 135 |
Laboratory | 8 | F | – | Tissue samples* | 115,690,244 | 617,032 | 638 | 82.6 | 198,980 | 0 |
Laboratory | 8 | F | – | Hindgut | 213,961,342 | 919,075 | 727 | 86.1 | 309,351 | 4 |
Laboratory | 8 | F | – | Gut content | 85,069,086 | 460,039 | 516 | 70 | 165,226 | 92 |
Laboratory | 7 | F | + | Tissue samples* | 136,360,100 | 714,448 | 647 | 84.5 | 238,023 | 32 |
Laboratory | 7 | F | + | Hindgut | 196,487,170 | 960,311 | 760 | 90 | 321,849 | 6 |
Laboratory | 7 | F | + | Gut content | 61,471,292 | 284,429 | 502 | 65.1 | 101,524 | 72 |
Availles | 10 | M | – | Tissue samples* | 133,995,390 | 708,519 | 707 | 85.7 | 229,060 | 2 |
Availles | 10 | M | – | Hindgut | 211,001,880 | 857,462 | 747 | 87.7 | 286,800 | 7 |
Availles | 10 | M | – | Gut content | 36,755,870 | 19,887 | 513 | 10.1 | 20,111 | 46 |
Availles | 10 | F | + | Tissue samples* | 144,043,638 | 692,481 | 658 | 85.7 | 230,975 | 13 |
Availles | 10 | F | + | Hindgut | 212,185,430 | 920,773 | 814 | 90.4 | 314,895 | 17 |
Availles | 10 | F | + | Gut content | 55,605,558 | 200,488 | 452 | 52.7 | 67,468 | 36 |