Skip to main content

Table 1 A. vulgare samples used for the reference transcriptome and assembly statistics

From: Lignocellulose degradation at the holobiont level: teamwork in a keystone soil invertebrate

Samples
 Origin Wolbachia status Gender N GenBank No. of reads
  Celles sur Belle, France + F 1 SRS625835 3,881,922
  Vancouver, Canada + F 1 SRS625837 7,081,881
  Mentrida, Spain F 1 SRS625838 8,768,792
  Heraklion, Greece F 1 SRS625839 28,956,650
  Fornazo, Italia F 1 SRS625840 8,826,638
  Helsingör, Denmark + F 1 SRS625841 7,520,054
  Porto Alegre, Brazil F 1 SRS625842 13,957,815
  Germany F 1 SRS625843 8,824,057
  Prague, Czech Republic + F 1 SRS625844 35,468,027
  Saint Guilhem, France + F 1 SRS625845 10,874,926
  Total      134,160,762
Statistics
 Parameters Number of sequences
  Total number of bases 104,530,589
  Total number of transcripts 143,383
  Total number of transcripts after removing Prokaryotes and viruses 142,909
  Mean GC count 36%
  N50 1805
  Mean length 685
  % reads used for assembly 95.85%
  Total number of predicted ORFs 43,672