From: IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences
Classified to genus levelα (%) | Groups present in the mock community | Absent from mock communityβ | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Root | Domain | Phylum | Class | Order | Family | Genus | Order | Family | Genus | |||
Using the RDP training set | BLAST | 97.9 | 1 | 0 | 0 | 0 | 0 | 0 | 17 | 0 | 0 | 24 |
IDTAXA | 94.2 | 1 | 0 | 1 | 1 | 2 | 5 | 14 | 0 | 1 | 2 | |
MAPSeq | 96.5 | 1 | 0 | 0 | 0 | 0 | 4 | 15 | 0 | 2 | 6 | |
QIIME | 95.4 | 1 | 0 | 0 | 0 | 0 | 0 | 16 | 0 | 0 | 7 | |
RDP Classifier | 93.3 | 1 | 1 | 2 | 3 | 6 | 8 | 15 | 0 | 2 | 6 | |
SINTAX | 94.2 | 1 | 1 | 1 | 4 | 3 | 3 | 14 | 1 | 0 | 3 | |
SPINGO | 96.5 | 1 | 0 | 0 | 0 | 0 | 0 | 17 | 0 | 0 | 3 | |
With expected genera excluded from training data | BLAST | 17.3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 65 |
IDTAXA | 0.01 | 1 | 1 | 1 | 2 | 3 | 4 | 0 | 0 | 2 | 2 | |
MAPSeq | 24.6 | 1 | 0 | 0 | 2 | 5 | 11 | 0 | 1 | 8 | 20 | |
QIIME | 13.5 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 16 | |
RDP Classifier | 3.83 | 1 | 1 | 2 | 3 | 6 | 9 | 0 | 0 | 3 | 12 | |
SINTAX | 8.76 | 1 | 1 | 1 | 7 | 5 | 6 | 0 | 1 | 1 | 9 | |
SPINGO | 26.7 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 15 |