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Table 2 Circular nature of most overrepresented contigs in MDA_G1 and MDA_G2 viromes

From: Evaluation of bias induced by viral enrichment and random amplification protocols in metagenomic surveys of saliva DNA viruses

   

BLASTx best hit

  

Overlapping ends

Contig*

Size (bp)

Fold change

Species

Family

e value

Custom script

Minimus2

1473

3117

2965

Enterobacteria phage I2–2

Inoviridae

1 × 10−9

Yes

Yes

917

4832

501

Microviridae Fen7918_21

Microviridae

4 × 10−84

Yes

Yes

640

6738

356

Microviridae Fen685_11

Microviridae

3 × 10−24

Yes

Yes

732

5884

277

Microviridae IME-16

Microviridae

0

Yes

Yes

1041

4332

253

Microviridae IME-16

Microviridae

0

No

No

1084

4182

205

Vibrio phage fs2

Inoviridae

2 × 10−21

Yes

Yes

45

39,552

168

Dickeya phage Limestone

Myoviridae

5 × 10−43

No

No

781

5536

153

Ralstonia phage p12J

Inoviridae

2 × 10−12

Yes

Yes

674

6397

140

Parabacteroides phage YZ-2015a

Microviridae

4 × 10−31

Yes

Yes

211

18,180

130

Mycobacterium phage DrDrey

Siphoviridae

2 × 10−21

No

No

218

17,800

114

Bacillus phage AR9

Myoviridae

3 × 10−18

No

No

1431

3182

86

Porcine stool-associated circular virus 5

Circoviridae

7 × 10−131

Yes

Yes

413

10,049

55

Enterobacteria phage Min27

Podoviridae

1 × 10−18

No

No

1465

3125

52

Enterobacteria phage I2–2

Inoviridae

6 × 10−9

Yes

Yes

977

4555

50

Gokushovirus WZ-2015a

Microviridae

3 × 10−7

No

Yes

  1. *Only those contigs with > 50× fold change in MDA_G1 and MDA_G2 are shown