From: Increased richness and diversity of the vaginal microbiota and spontaneous preterm birth
Species | Total reads | Preterm (n = 46) | Term (n = 170) | Prevalence ratio | FDR* | ||
---|---|---|---|---|---|---|---|
Reads | Prevalence (%) | Reads | Prevalence (%) | ||||
A | term/preterm | Â | |||||
 Bifidobacterium infantis | 56,246 | 409 | 19.57 | 55,837 | 40.00 | 2.04 | 0.033 |
 Lactobacillus delbrueckii subsp. lactis | 48,063 | 9 | 4.35 | 48,054 | 28.82 | 6.63 | 0.005 |
 Lactobacillus acidophilus | 17,440 | 569 | 89.13 | 16,871 | 97.65 | 1.10 | 0.033 |
 Prevotella amnii | 13,339 | 68 | 4.35 | 13,271 | 21.76 | 5.01 | 0.023 |
 Pseudovibrio sp. | 1634 | 52 | 15.22 | 1582 | 91.76 | 6.03 | 0.000 |
 Streptococcus parasanguinis | 1199 | 63 | 19.57 | 1136 | 88.82 | 4.54 | 0.000 |
 Sphingobium yanoikuyae | 1174 | 16 | 13.04 | 1158 | 80.00 | 6.13 | 0.000 |
 Prevotella tannerae | 930 | 58 | 15.22 | 872 | 88.24 | 5.80 | 0.000 |
 Clostridium innocuum | 814 | 42 | 13.04 | 772 | 81.18 | 6.22 | 0.000 |
 Eubacterium siraeum | 641 | 43 | 17.39 | 598 | 78.24 | 4.50 | 0.000 |
 Massilia timonae | 426 | 6 | 8.70 | 420 | 70.00 | 8.05 | 0.000 |
B | preterm/term | Â | |||||
 Prevotella timonensis | 11,450 | 4211 | 71.74 | 7239 | 45.29 | 1.58 | 0.005 |
 Dialister micraerophilus | 7381 | 2850 | 67.39 | 4531 | 44.12 | 1.53 | 0.021 |
 Prevotella sp. | 2216 | 626 | 47.83 | 1590 | 14.71 | 3.25 | 0.000 |
 Bacteroides coagulans | 1283 | 1212 | 41.30 | 71 | 7.06 | 5.85 | 0.000 |
 Corynebacterium accolens | 1083 | 999 | 52.17 | 84 | 13.53 | 3.86 | 0.000 |
 Porphyromonas uenonis | 1040 | 795 | 28.26 | 245 | 12.94 | 2.18 | 0.038 |
 Actinomyces neuii subsp. anitratus | 877 | 738 | 43.48 | 139 | 10.00 | 4.35 | 0.000 |
 Peptoniphilus harei | 875 | 811 | 45.65 | 64 | 7.65 | 5.97 | 0.000 |
 Lactobacillus fermentum | 729 | 664 | 17.39 | 65 | 5.29 | 3.29 | 0.026 |
 Facklamia hominis | 711 | 709 | 15.22 | 2 | 1.18 | 12.93 | 0.000 |
 Prevotella bivia | 638 | 228 | 26.09 | 410 | 8.24 | 3.17 | 0.005 |
 Prevotella corporis | 535 | 463 | 23.91 | 72 | 5.88 | 4.07 | 0.000 |
 Corynebacterium timonense | 503 | 355 | 34.78 | 148 | 10.00 | 3.48 | 0.000 |
 Corynebacterium genitalium | 372 | 323 | 34.78 | 49 | 7.06 | 4.93 | 0.000 |
 Tepidanaerobacter sp. | 329 | 303 | 23.91 | 26 | 4.12 | 5.81 | 0.000 |
 Corynebacterium amycolatum | 264 | 228 | 32.61 | 36 | 4.71 | 6.93 | 0.000 |
 Parvimonas micra | 193 | 183 | 10.87 | 10 | 1.18 | 9.24 | 0.005 |
 Mobiluncus curtsii subsp. curtsii | 183 | 171 | 21.74 | 12 | 2.35 | 9.24 | 0.000 |
 Finegoldia magna | 155 | 149 | 13.04 | 6 | 3.53 | 3.70 | 0.038 |
 Coprococcus eutactus | 154 | 68 | 47.83 | 86 | 27.06 | 1.77 | 0.026 |
 Brevibacterium linens | 147 | 142 | 10.87 | 5 | 0.59 | 18.48 | 0.000 |
 Rothia dentocariosa | 144 | 120 | 30.43 | 24 | 5.29 | 5.75 | 0.000 |
 Streptococcus thermophilus | 132 | 126 | 19.57 | 6 | 2.35 | 8.32 | 0.000 |
 Magnetospirillum magnetotacticum | 116 | 40 | 43.48 | 76 | 24.12 | 1.80 | 0.033 |
 Dethiobacter alkaliphilus | 101 | 97 | 10.87 | 4 | 1.76 | 6.16 | 0.017 |
 Brevibacterium massiliense | 99 | 86 | 15.22 | 13 | 1.18 | 12.93 | 0.000 |
 Eremococcus coleocola | 90 | 82 | 10.87 | 8 | 1.76 | 6.16 | 0.017 |
 Anaeromusa acidaminophila | 86 | 85 | 15.22 | 1 | 0.59 | 25.87 | 0.000 |
 Arthrobacter globiformis | 66 | 48 | 10.87 | 18 | 1.76 | 6.16 | 0.017 |
 Staphylococcus epidermidis | 54 | 47 | 13.04 | 7 | 2.35 | 5.54 | 0.009 |
 Corynebacterium simulans | 52 | 41 | 26.09 | 11 | 1.76 | 14.78 | 0.000 |
 Anaeroglobus geminatus | 52 | 49 | 15.22 | 3 | 1.18 | 12.93 | 0.000 |
 Cellvibrio gilvus | 42 | 26 | 15.22 | 16 | 1.76 | 8.62 | 0.000 |
 Prosthecochloris vibrioformis | 41 | 40 | 6.52 | 1 | 0.59 | 11.09 | 0.028 |
 Prevotella buccalis | 33 | 33 | 15.22 | 0 | 0.00 | – | 0.000 |
 Acidaminococcus fermentans | 31 | 29 | 13.04 | 2 | 1.18 | 11.09 | 0.000 |
 Brevibacterium casei | 25 | 24 | 8.70 | 1 | 0.59 | 14.78 | 0.005 |
 Streptococcus sanguinis | 23 | 18 | 13.04 | 5 | 2.35 | 5.54 | 0.009 |
 Atopobium parvulum | 23 | 20 | 8.70 | 3 | 1.18 | 7.39 | 0.023 |
 Peptoniphilus duerdenii | 22 | 20 | 10.87 | 2 | 0.59 | 18.48 | 0.000 |
 Pelobacter propionicus | 21 | 18 | 6.52 | 3 | 0.59 | 11.09 | 0.028 |
 Staphylococcus hominis | 21 | 17 | 15.22 | 4 | 1.76 | 8.62 | 0.000 |
 Atopostipes suicloacalis | 18 | 8 | 10.87 | 10 | 1.18 | 9.24 | 0.005 |
 Corynebacterium pyruviciproducens | 18 | 13 | 13.04 | 5 | 1.76 | 7.39 | 0.005 |
 Corynebacterium jeikeium | 14 | 11 | 13.04 | 3 | 0.59 | 22.17 | 0.000 |
 Sporichthya polymorpha | 13 | 11 | 8.70 | 2 | 1.18 | 7.39 | 0.023 |
 Rhodococcus jostii | 13 | 7 | 8.70 | 6 | 1.18 | 7.39 | 0.023 |
 Nitrospina gracilis | 10 | 5 | 8.70 | 5 | 0.59 | 14.78 | 0.005 |
 Megasphaera sp. BV3C16-1 | 10 | 9 | 6.52 | 1 | 0.59 | 11.09 | 0.028 |