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Table 4 SRC_c impact on Radiolaria-Dinophyta holobiont model (M3)

From: A de novo approach to disentangle partner identity and function in holobiont systems

  no SRC SRC
# reads used in assembly 48,733,956 48,660,697
# assembled contigs 167,023 168,899
# predicted cds 75,450 74,017
# annotated cds 47,260 45,768
N50 (bp)
 total 818 702
host   277
symbiont   324
shared   298
unassigned   714
remapping rates (%)
 total 85.6 90.5
host   65.2
symbiont   76.2
shared   81.3
unassigned   89.7
# chimera
 total 777 418
host   4
symbiont   47
shared   0
unassigned   367
Calculation time (min)
 total 330 2,783
SRC   2,460
assembly 330 323
  1. SRC strategy’s impact on assembled contigs quality and calculation times of the Radiolaria-Dinophyta holobiont model (M3) compared to a direct meta-transcriptome assembly strategy (i.e., the noSRC strategy). In gray are displayed the details for the SRC strategy holobiont categories (host, symbiont, shared, and unassigned). The “total” values for N50 and remapping rates of the SRC strategy were re-calculated on pooled contigs from host, symbiont, shared, and unassigned subsets
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