Skip to main content

Table 3 De novo assembly metrics and downstream analysis of SRC_c resulting subsets for holobiont models M1a, M2 and M3

From: A de novo approach to disentangle partner identity and function in holobiont systems

   # contigs % contigs in holobiont Smallest Longest N50 Mean length % GC Remapping rate (%) # with ORFs % of contigs with ORFs Remapping rate of holobiont reads (%) # predicted cds % contigs with predicted cds # annotated cds % cds with functional annotations
Cnidaria-Dinophyta holobiont (M1a) Host 90,558 15.66 201 29,214 1840 949 42 97.8 31,105 34.3 71.6 42,992 47.5 35,358 39
Symbiont 127,212 22 201 13,093 1091 719 57 90.4 58,286 45.8 72.3 84,151 66.2 53,011 41.7
Shared 46,017 7.96 201 7727 1067 796 55 82.3 28,075 61 41.4 38,547 83.8 25,382 55.2
Unassigned 314,546 54.39 201 19,174 732 558 46 83.6 67,509 21.5 25.9 89,533 28.5 58,188 18.5
Total 578,333         184,975    255,223   171,939  
Porifera-Bacteria holobiont (M2) Host 2654 2.33 201 1921 299 311 42 44.4 215 8.1 17.6 707 26.6 593 83.9
Symbiont 2431 2.14 201 5001 406 396 46 25 411 16.9 4.7 1072 44.1 988 92.2
Shared 2324 2.04 201 751 301 299 54 86.4 8 0.3 22.3 163 7 30 18.4
Unassigned 106,377 93.49 201 8811 748 572 39 73.2 29,520 27.8 59.1 43,150 40.6 23,127 53.6
Total 113,786         30,154    45,092   24,738 54.9
Radiolaria-Dinophyta holobiont (M3) Host 693 0.41 201 1209 277 303 42 65.2 44 6.3 10.6 123 17.7 49 7.1
Symbiont 5207 3.08 201 1777 324 328 54 76.2 618 11.9 32 1468 28.2 942 18.1
Shared 52 0.03 201 639 298 308 39 81.3 0 0 18.6 6 11.5 5 9.6
Unassigned 162,947 96.48 201 10,569 714 580 41 89.7 49,032 30.1 73.2 72,420 44.4 44,772 27.5
Total 168,899         49,694    74,017   45,768  
\