Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

Microbiome

Table 1 Mock communities currently integrated in tax-credit

Study ID^a	Target gene^b	Platform	Species	Strains	Citation
mock-1	16S	HiSeq	46	48	[33]
mock-2	16S	MiSeq	46	48	[33]
mock-3	16S	MiSeq	21	21	[33]
mock-4	16S	MiSeq	21	21	[33]
mock-5	16S	MiSeq	21	21	[33]
mock-7	16S	HiSeq	67	67	[34]
mock-8	16S	HiSeq	67	67	[14]
mock-9	ITS	HiSeq	13	16	[14]
mock-10	ITS	HiSeq	13	16	[14]
mock-12	16S	MiSeq	26	27	[4]
mock-16	16S	MiSeq	56	59	[35]
mock-18	16S	MiSeq	15	15	[36]
mock-19	16S	MiSeq	15	27	[36]
mock-20	16S	MiSeq	20	20	[37]
mock-21	16S	MiSeq	20	20	[37]
mock-22	16S	MiSeq	20	20	[37]
mock-23	16S	MiSeq	20	20	[37]
mock-24	ITS	MiSeq	8	8	[38]
mock-26	ITS	FLX Titanium	11	11	[39]

^aAll studies are available on mockrobiota [14] at https://github.com/caporaso-lab/mockrobiota/tree/master/data/[studyID]
^bAbbreviations: 16S, 16S rRNA gene; HiSeq, Illumina HiSeq; MiSeq, Illumina MiSeq

ISSN: 2049-2618