Table 1 Bacterial strains whose genomic DNA was mixed in an equimolar ratio to construct the Mock Community DNA sample
From: Species classifier choice is a key consideration when analysing low-complexity food microbiome data
Species | Strain | RefSeq assembly accession | GC content (%) | Genome size (bp) |
|---|---|---|---|---|
Acetobacter pasteurianus | LMG 1513 | GCF_000010825.1 | 53.1 | 2,907,495 |
Bacteroides vulgatus | DSM 1447 | GCF_000012825.1 | 42.2 | 5,163,189 |
Bifidobacterium adolescentis Reuter | DSM 20083 | GCF_000010425.1 | 59.3 | 2,089,645 |
Corynebacterium casei | LMG 19264 | GCF_000550785.1 | 55.7 | 3,113,488 |
Gluconacetobacter medellinensis | LMG 1693 | GCF_000182745.2 | 66.3 | 3,136,818 |
Lactobacillus brevis | ATCC 376 | GCF_000014465.1 | 45.6 | 2,291,220 |
Lactobacillus casei | ATCC 334 | GCF_000014525.1 | 46.6 | 2,895,264 |
Lactobacillus delbrueckii | DSM 20081* | GCF_001437195.1 | 49.7 | 415,890 |
Lactobacillus fermentum | LMG 18251 | GCF_000010145.1 | 51.8 | 2,098,685 |
Lactobacillus reuteri | DSM 20016 | GCF_000016825.1 | 38.9 | 1,999,618 |
Leuconostoc mesenteroides | LMG 6909* | GCF_000160595.1 | 37.7 | 543,364 |
Propionibacterium freudenreichii | LMG 16412 | GCF_000940845.1 | 67.3 | 2,649,166 |
Streptococcus thermophilus | LMG 18311 | GCF_000011825.1 | 39.1 | 1,796,846 |