| SA expressed at ≥ 5 reads in 3 out of 10 samples | SL expressed at ≥ 5 reads in 3 out of 9 samples | RA expressed at ≥ 5 reads in 3 out of 8 samples | RL expressed at ≥ 5 reads in 3 out of 9 samples | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Ascomycetes | All | Plant effect | All | Plant effect | All | Plant effect | All | Plant effect | ||||
 | Up in a | Up in l | Up in a | Up in l | Up in a | Up in l | Up in a | Up in l | ||||
Cellular processes and signaling | 71 | 0 | 0 | 28 | 2 | 0 | 769 | 89 | 30 | 729 | 6 | 274 |
 Cell motility | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
 Cell wall/membrane/envelope biogenesis | 1 | 0 | 0 | 0 | 0 | 0 | 36 | 2 | 0 | 45 | 0 | 21 |
 Cytoskeleton | 7 | 0 | 0 | 7 | 2 | 0 | 96 | 13 | 7 | 74 | 1 | 19 |
 Defense mechanisms | 2 | 0 | 0 | 0 | 0 | 0 | 13 | 0 | 0 | 8 | 0 | 1 |
 Extracellular structures | 4 | 0 | 0 | 0 | 0 | 0 | 5 | 0 | 0 | 3 | 0 | 0 |
 Intracellular trafficking, secretion, and vesicular transport | 0 | 0 | 0 | 2 | 0 | 0 | 114 | 15 | 3 | 77 | 0 | 28 |
 Nuclear structure | 0 | 0 | 0 | 0 | 0 | 0 | 9 | 1 | 0 | 7 | 0 | 4 |
 Posttranslational modification, protein turnover, chaperones | 50 | 0 | 0 | 17 | 0 | 0 | 334 | 30 | 14 | 355 | 3 | 128 |
 Signal transduction mechanisms | 7 | 0 | 0 | 2 | 0 | 0 | 161 | 28 | 6 | 160 | 2 | 73 |
Information storage and processing | 137 | 0 | 0 | 35 | 0 | 0 | 918 | 51 | 57 | 785 | 4 | 348 |
 Chromatin structure and dynamics | 7 | 0 | 0 | 4 | 0 | 0 | 40 | 2 | 2 | 35 | 0 | 22 |
 Replication, recombination and repair | 1 | 0 | 0 | 0 | 0 | 0 | 46 | 1 | 0 | 1 | 0 | 0 |
 RNA processing and modification | 1 | 0 | 0 | 0 | 0 | 0 | 128 | 13 | 2 | 34 | 1 | 14 |
 Transcription | 3 | 0 | 0 | 31 | 0 | 0 | 90 | 8 | 2 | 61 | 0 | 28 |
 Translation, ribosomal structure and biogenesis | 125 | 0 | 0 | 0 | 0 | 0 | 614 | 27 | 51 | 654 | 3 | 284 |
Metabolism | 134 | 0 | 0 | 16 | 0 | 4 | 1083 | 113 | 50 | 763 | 3 | 319 |
 Amino acid transport and metabolism | 10 | 0 | 0 | 0 | 0 | 0 | 149 | 26 | 1 | 97 | 0 | 45 |
 Carbohydrate transport and metabolism | 16 | 0 | 0 | 4 | 0 | 0 | 179 | 32 | 7 | 162 | 2 | 91 |
 Cell cycle control, cell division, chromosome partitioning | 0 | 0 | 0 | 0 | 0 | 0 | 77 | 3 | 1 | 42 | 0 | 17 |
 Coenzyme transport and metabolism | 1 | 0 | 0 | 1 | 0 | 0 | 38 | 1 | 2 | 27 | 0 | 4 |
 Energy production and conversion | 65 | 0 | 0 | 8 | 0 | 4 | 309 | 19 | 35 | 267 | 0 | 88 |
 Inorganic ion transport and metabolism | 13 | 0 | 0 | 0 | 0 | 0 | 66 | 8 | 0 | 61 | 0 | 23 |
 Lipid transport and metabolism | 11 | 0 | 0 | 1 | 0 | 0 | 125 | 12 | 0 | 51 | 0 | 26 |
 Nucleotide transport and metabolism | 1 | 0 | 0 | 0 | 0 | 0 | 42 | 2 | 0 | 20 | 0 | 9 |
 Secondary metabolites biosynthesis, transport and catabolism | 17 | 0 | 0 | 2 | 0 | 0 | 98 | 10 | 4 | 36 | 1 | 16 |
Poorly characterized | 31 | 0 | 0 | 1 | 0 | 0 | 434 | 67 | 8 | 253 | 0 | 96 |
 Function unknown | 2 | 0 | 0 | 0 | 0 | 0 | 85 | 6 | 0 | 13 | 0 | 4 |
 General function prediction only | 29 | 0 | 0 | 1 | 0 | 0 | 349 | 61 | 8 | 240 | 0 | 92 |
Total KOG annotated, expressed | 373 | 0 | 0 | 80 | 2 | 3 | 3204 | 320 | 145 | 2528 | 13 | 1037 |