| SA expressed at ≥ 5 reads in 3 out of 10 samples | SL expressed at ≥ 5 reads in 3 out of 9 samples | RA expressed at ≥ 5 reads in 3 out of 8 samples | RL expressed at ≥ 5 reads in 3 out of 9 samples | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
 | All | Plant effect | All | Plant effect | All | Plant effect | All | Plant effect | ||||
 | Up in a | up in l |  | Up in a | Up in l |  | Up in a | Up in l |  | Up in a | Up in l | |
Protists (Oomycetes) | 7 | 0 | 0 | 7 | 0 | 0 | 490 | 8 | 365 | 239 | 0 | 12 |
Protists (other) | 49 | 0 | 0 | 50 | 0 | 0 | 1183 | 68 | 443 | 1254 | 19 | 80 |
Ascomycetes | 437 | 0 | 0 | 95 | 2 | 4 | 3646 | 421 | 166 | 2804 | 20 | 1139 |
Basidiomycetes | 19 | 0 | 0 | 17 | 0 | 0 | 309 | 8 | 62 | 139 | 1 | 6 |
Glomeromycotina | 1 | 0 | 0 | 1 | 0 | 0 | 12 | 1 | 2 | 122 | 0 | 1 |
Fungi (other) | 4 | 0 | 0 | 3 | 0 | 0 | 108 | 5 | 31 | 188 | 0 | 10 |
Ascomycota (selected) | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Phialocephala | 3 | 0 | 0 | 0 | 0 | 0 | 1886 | 289 | 3 | 21 | 0 | 4 |
Colletotrichum | 22 | 0 | 0 | 2 | 0 | 0 | 63 | 2 | 8 | 166 | 2 | 65 |
Fusarium | 76 | 0 | 0 | 9 | 0 | 3 | 105 | 1 | 24 | 104 | 0 | 25 |
Acremonium | 66 | 0 | 0 | 6 | 0 | 0 | 47 | 1 | 10 | 39 | 0 | 11 |
Trichoderma | 31 | 0 | 0 | 7 | 0 | 0 | 58 | 5 | 8 | 66 | 0 | 22 |