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Table 4 The number of significantly expressed microbial transcripts in root and shoot for each soil

From: Microbiome and ecotypic adaption of Holcus lanatus (L.) to extremes of its soil pH range, investigated through transcriptome sequencing

 

SA expressed at ≥ 5 reads in 3 out of 10 samples

SL expressed at ≥ 5 reads in 3 out of 9 samples

RA expressed at ≥ 5 reads in 3 out of 8 samples

RL expressed at ≥ 5 reads in 3 out of 9 samples

 

All

Plant effect

All

Plant effect

All

Plant effect

All

Plant effect

 

Up in a

up in l

 

Up in a

Up in l

 

Up in a

Up in l

 

Up in a

Up in l

Protists (Oomycetes)

7

0

0

7

0

0

490

8

365

239

0

12

Protists (other)

49

0

0

50

0

0

1183

68

443

1254

19

80

Ascomycetes

437

0

0

95

2

4

3646

421

166

2804

20

1139

Basidiomycetes

19

0

0

17

0

0

309

8

62

139

1

6

Glomeromycotina

1

0

0

1

0

0

12

1

2

122

0

1

Fungi (other)

4

0

0

3

0

0

108

5

31

188

0

10

Ascomycota (selected)

            

Phialocephala

3

0

0

0

0

0

1886

289

3

21

0

4

Colletotrichum

22

0

0

2

0

0

63

2

8

166

2

65

Fusarium

76

0

0

9

0

3

105

1

24

104

0

25

Acremonium

66

0

0

6

0

0

47

1

10

39

0

11

Trichoderma

31

0

0

7

0

0

58

5

8

66

0

22

  1. The number of significantly expressed microbial transcripts (All) is defined as the number of transcripts that obtained ≥ 5 aligned reads in at least three samples from each of the following treatments: root acid bog soil (RA), root lime-stone soil (RL), shoot acid bog soil (SA) and shoot lime-stone soil (SL). Significant ecotype effects (absolute log2FC ≤ −1 or ≥ 1, FDR < 0.05) as identified by DESeq2 analysis are reported in subsequent columns for each treatment group under the heading plant effect