Table 2 Selected significantly enriched plant-assigned GO terms obtained from DAVID, for various shoot and root pairwise comparisons
Classification | GO ID | GO description | p value (Benjamini) | FE | |
|---|---|---|---|---|---|
Shoot Aa v La upregulated DEGs | |||||
Stress | BP | GO:0009651 | Response to salt stress | 1.54E−03 | 2.03 |
BP | GO:0046686 | Response to cadmium ion | 1.67E−03 | 2.26 | |
BP | GO:0009636 | Response to toxic substance | 5.81E−06 | 6.15 | |
BP | GO:0009611 | Response to wounding | 3.65E−08 | 3.89 | |
BP | GO:0042742 | Defense response to bacterium | 5.51E−03 | 2.29 | |
Shoot Aa v La downregulated DEGs | |||||
Cell wall | CC | GO:0005618 | Cell wall | 1.32E−03 | 1.97 |
Shoot Al v Ll upregulated DEGs | |||||
Stress | BP | GO:0009611 | Response to wounding | 3.71E−06 | 10.62 |
Shoot La v Ll downregulated DEGs | |||||
Stress | BP | GO:0009407 | Toxin catabolic process | 5.20E−05 | 13.36 |
BP | GO:0009636 | Response to toxic substance | 1.44E−03 | 8.95 | |
BP | GO:0042742 | Defense response to bacterium | 2.51E−03 | 3.71 | |
Root Aa v La upregulated DEGs | |||||
Stress | BP | GO:0009651 | Response to salt stress | 8.43E−04 | 2.43 |
BP | GO:0046686 | Response to cadmium ion | 1.04E−04 | 3.02 | |
Root Aa v La downregulated DEGs | |||||
Stress | BP | GO:0009651 | Response to salt stress | 9.08E−04 | 2.17 |
BP | GO:0046686 | response to cadmium ion | 1.79E−03 | 2.30 | |
Phosphate | MF | GO:0003993 | Acid phosphatase activity | 9.00E−05 | 6.10 |
BP | GO:0006817 | Phosphate ion transport | 6.02E−03 | 7.06 | |
MF | GO:0015114 | Phosphate ion transmembrane transporter activity | 2.07E−03 | 10.57 | |
CC | GO:0009505 | Plant-type cell wall | 1.48E−09 | 3.33 | |
BP | GO:0071555 | Cell wall organization | 4.56E−03 | 2.28 | |
Nitrate | BP | GO:0015706 | Nitrate transport | 7.42E−03 | 8.34 |
Lignin | BP | GO:0009809 | Lignin biosynthetic process | 1.85E−03 | 4.56 |
Root Al v Ll upregulated DEGs | |||||
Stress | BP | GO:0009651 | Response to salt stress | 4.14E−04 | 2.64 |
BP | GO:0046686 | Response to cadmium ion | 3.73E−06 | 3.50 | |
BP | GO:0009636 | Response to toxic substance | 9.75E−03 | 5.88 | |
Cell wall | CC | GO:0005618 | Cell wall | 3.51E−09 | 3.30 |
Root Al v Ll downregulated DEGs | |||||
Phosphate | MF | GO:0003993 | Acid phosphatase activity | 1.10E−03 | 4.23 |
CC | GO:0009505 | Plant-type cell wall | 1.58E−21 | 3.97 | |
BP | GO:0071555 | Cell wall organization | 1.23E−13 | 3.29 | |
BP | GO:0009834 | Plant-type secondary cell wall biogenesis | 1.59E−04 | 5.22 | |
BP | GO:0010411 | Xyloglucan metabolic process | 1.13E−04 | 5.47 | |
BP | GO:0045492 | Xylan biosynthetic process | 9.33E−03 | 5.47 | |
BP | GO:0045493 | Xylan catabolic process | 6.73E−04 | 11.49 | |
Nitrate | MF | GO:0015112 | Nitrate transmembrane transporter activity | 8.80E−03 | 7.34 |
Lignin | BP | GO:0009809 | Lignin biosynthetic process | 1.09E−07 | 5.31 |
BP | GO:0046274 | Lignin catabolic process | 3.95E−04 | 8.21 | |
Iron | MF | GO:0020037 | Heme binding | 5.41E−04 | 2.00 |
Root Aa v Al upregulated DEGS | |||||
Cell wall | BP | GO:0009834 | Plant-type secondary cell wall biogenesis | 4.23E−05 | 19.79 |
CC | GO:0009505 | Plant-type cell wall | 2.03E−04 | 4.80 | |
Lignin | BP | GO:0009809 | Lignin biosynthetic process | 3.79E−03 | 11.20 |