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Fig. 5 | Microbiome

Fig. 5

From: Microbiome and ecotypic adaption of Holcus lanatus (L.) to extremes of its soil pH range, investigated through transcriptome sequencing

Fig. 5

Heirarchical cluster heatmap of microbial-annotated transcripts, generated using microbial RNA-Seq count data, using hclust and heatmap2 in R. Transcripts are clustered by row, and samples by column. The first letter refers to plant (S shoot, R root), the second to soil type (A acid bog soil, L limestone quarry soil), the third to plant ecotype (a acid bog plant ecotype, l limestone quarry plant ecotype) and the fourth to the individual plant ID (acid bog plant IDs A, B, C, D, F; limestone quarry plant IDs I, H, R, O, K), the number after R or S refers to the sample number 1–36, with 1–19 being shoot samples and 20–36 root samples

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Microbiome

ISSN: 2049-2618

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