Table 2 Significantly differentially abundant taxa between 2008 and 2010 among groups of individuals of interest from the Indonesia dataset
Phylum | Class | Order | Family | Genus | P value |
|---|---|---|---|---|---|
A. Treatment effect—lower only after treatment | |||||
 Proteobacteria | Alphaproteobacteria | Rhizobiales | Brucellaceae |  | 3.7E-02 |
 Proteobacteria | Alphaproteobacteria | Rhizobiales | Brucellaceae | Ochrobactrum | 3.7E-02 |
B. Treatment effect—higher only after treatment | |||||
 Bacteroidetes | Sphingobacteria |  |  |  | 3.2E-04 |
 Bacteroidetes | Sphingobacteria | Sphingobacteriales |  |  | 2.0E-04 |
 Bacteroidetes | Sphingobacteria | Sphingobacteriales | Sphingobacteriaceae |  | 5.1E-04 |
 Bacteroidetes | Flavobacteria |  |  |  | 2.1E-03 |
 Bacteroidetes | Flavobacteria | Flavobacteriales |  |  | 2.1E-03 |
 Bacteroidetes | Flavobacteria | Flavobacteriales | Flavobacteriaceae |  | 2.1E-03 |
 Proteobacteria | Gammaproteobacteria | Pseudomonadales |  |  | 7.6E-03 |
 Firmicutes | Bacilli | Lactobacillales | Enterococcaceae | Enterococcus* | 9.3E-03 |
C. Deworming effect—higher only after deworming | |||||
 Bacteroidetes | Sphingobacteria | Sphingobacteriales | Sphingobacteriaceae | Sphingobacterium | 3.7E-02 |
 Proteobacteria | Deltaproteobacteria |  |  |  | 3.8E-02 |
 Firmicutes | Erysipelotrichia | Erysipelotrichales | Erysipelotrichaceae | Clostridium_XVIII** | 4.2E-02 |
D. Deworming effect—lower only after deworming | |||||
 Bacteroidetes | Bacteroidia | Bacteroidales | Prevotellaceae | Xylanibacter | 1.6E-02 |
 Proteobacteria | Betaproteobacteria | Burkholderiales | Sutterellaceae |  | 2.0E-02 |
 Firmicutes | Bacilli | Lactobacillales | Leuconostocaceae | Leuconostoc | 4.0E-02 |
 Bacteroidetes | Bacteroidia | Bacteroidales | Porphyromonadaceae | Butyricimonas | 4.2E-02 |
E. Self-cleared—higher only after self-clearing | |||||
 Bacteroidetes | Bacteroidia | Bacteroidales | Porphyromonadaceae |  | 2.0E-02 |
 Bacteroidetes | Bacteroidia | Bacteroidales | Porphyromonadaceae | Parabacteroides | 8.5E-03 |
 Bacteroidetes | Bacteroidia | Bacteroidales | Bacteroidaceae |  | 2.7E-02 |
 Bacteroidetes | Bacteroidia | Bacteroidales | Bacteroidaceae | Bacteroides | 4.6E-02 |
 Synergistetes |  |  |  |  | 3.5E-02 |
 Synergistetes | Synergistia |  |  |  | 3.5E-02 |
 Synergistetes | Synergistia | Synergistales |  |  | 3.5E-02 |
E. Self-cleared—lower only after self-clearing | |||||
 Actinobacteria | Actinobacteria | Coriobacteriales | Coriobacteriaceae | Olsenella* | 1.4E-02 |