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Table 1 List of genes and proteins of interest involved in virulence, bacterial survival and interactions identified in the metaproteome and metatranscriptome of AOD lesions and their corresponding bacterial species/group of origin

From: Integrated multi-omic analysis of host-microbiota interactions in acute oak decline

Gene annotation B. goodwinii G. quercinecans R. victoriana G+ G−
Antitoxin HicB T     
Bacterial type II secretion system protein F domain protein T     
Protease CtpB     T  
Catalase PT T   T T
Colicin V secretion protein CvaA T P    
CRISPR-associated protein Csy3   T    
CsrB T T T   T
Cysteine protease avirulence protein AvrPphB T     
Effector protein HopM1 T     
Effector protein YopJ T     
Entericidin B membrane lipoprotein P     
Flavodoxin PT     
Harpin HrpN T     
HTH-type transcriptional regulator KdgR T     
Iron-binding protein IscA T     
Multidrug efflux pump subunit AcrB T   T   T
Oligoendopeptidase F, plasmid     PT  
Oligogalacturonate lyase T     
Oligopeptidase A T     
Pathogenicity factor T     
Pectate lyase A precursor T     
Peroxiredoxin OsmC PT     
Persistence and stress-resistance toxin PasT T     
ProP effector T     
Protease 2 T     
Protease HtpX T     
Putative oxidoreductase SadH   T    
Putative type II secretion system protein E T    T  
Response regulator UvrY T     
Serine protease AprX     T  
Superoxide dismutase [Mn] PT    T  
Thermostable beta-glucosidase B T    T  
Toxin A     PT  
Toxin B     T  
Toxin HigB-2 T     
Toxin-antitoxin biofilm protein TabA T     
Type II secretion system protein D T     PT
Type IV secretion system protein VirB   T    
Virulence factor SrfB T     
Virulence regulon transcriptional activator VirF T     
Virulence sensor histidine kinase PhoQ T     
  1. G+ signifies the two Gram-positive bacteria belonging to the Clostridioides and Carnobacterium, while G− signifies other Gram-negative bacteria excluding B. goodwinii, G. quercinecans and R. victoriana. P signifies detection of that gene in the proteomic data, while T signifies detection of the gene in the transcriptomic data from AOD lesions