Fig. 4

Read classification of the mockrobiota mock community using Bowtie 2 and PathoScope 2.0. a The proportion of reads mapped to the microbial species present in the mock community. Bowtie 2 was used for read alignment, and reads that aligned to multiple genome locations were assigned to the most probable genome location using PathoScope 2.0. b The proportion of reads mapped to the microbial genera present in the mock community. Bowtie 2 was used for read alignment, and reads that aligned to multiple genome locations were assigned to the most probable genome location using PathoScope 2.0