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Table 1 Summary of mapping results. Comparison of ResCap against MSS technology. The mapping ratios (on-target value) were extracted from the number of reads mapped (SAM files) divided by the total number of reads. The “gain values” are the results of dividing ResCap on-target value by the MSS on-target value

From: In-depth resistome analysis by targeted metagenomics

Sample Metagenome shotgun sequence MSS ResCap Gain
N° reads AbR BacMet Rel Total N° reads AbR BacMet Rel Total  
Bichat1 14,127,290 0.05% 0.002% 0.04% 0.10% 16,705,789 19% 0.48% 5.22% 24.68% 244.24
Bichat2 15,128,135 0.05% 0.028% 0.04% 0.12% 33,589,838 12% 5.56% 2.98% 20.27% 170.81
Bichat3 14,488,245 0.05% 0.005% 0.03% 0.09% 17,276,637 34% 2.31% 5.96% 41.83% 480.59
Bichat6 17,476,666 0.07% 0.001% 0.05% 0.12% 19,191,320 25% 0.85% 5.84% 32.13% 261.87
Bichat7 16,732,926 0.07% 0.002% 0.05% 0.13% 28,530,922 27% 0.33% 5.99% 33.60% 267.77
Bichat9 17,058,000 0.03% 0.013% 0.05% 0.09% 18,038,257 14% 10.59% 7.55% 31.80% 336.29
Bichat10 15,039,883 0.03% 0.066% 0.06% 0.15% 34,798,281 6% 28.81% 5.48% 40.63% 265.17
Bichat11 13,425,077 0.03% 0.091% 0.06% 0.18% 35,901,508 5% 26.73% 4.72% 35.98% 201.67
Bichat13 17,903,872 0.05% 0.023% 0.06% 0.14% 26,283,052 16% 13.27% 7.39% 36.85% 270.02
F266 19,557,955 0.06% 0.005% 0.02% 0.08% 14,024,345 21% 4.62% 2.57% 28.23% 337.50
PIG20 27,375,311 0.08% 0.028% 0.01% 0.12% 22,485,364 18% 16.20% 1.81% 36.38% 298.23
PIG26 13,831,057 0.07% 0.005% 0.02% 0.10% 15,756,070 19% 3.88% 2.73% 25.93% 271.20
PIG29 18,945,765 0.09% 0.018% 0.02% 0.12% 26,223,850 18% 10.26% 2.52% 30.65% 248.31
PIG31 12,778,294 0.07% 0.010% 0.02% 0.09% 18,055,019 13% 5.76% 2.08% 20.77% 219.12
PIG528 19,689,471 0.06% 0.003% 0.02% 0.08% 13,864,257 21% 2.70% 3.11% 26.83% 323.23
PIG94 15,985,219 0.07% 0.004% 0.02% 0.10 15,351,408 18% 2.57% 3.31% 24.05% 240.20
PIG96 9,290,402 0.06% 0.001% 0.01% 0.07% 12,225,935 21% 1.13% 1.67% 23.84% 320.90