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Table 1 Summary of mapping results. Comparison of ResCap against MSS technology. The mapping ratios (on-target value) were extracted from the number of reads mapped (SAM files) divided by the total number of reads. The “gain values” are the results of dividing ResCap on-target value by the MSS on-target value

From: In-depth resistome analysis by targeted metagenomics

Sample

Metagenome shotgun sequence MSS

ResCap

Gain

N° reads

AbR

BacMet

Rel

Total

N° reads

AbR

BacMet

Rel

Total

 

Bichat1

14,127,290

0.05%

0.002%

0.04%

0.10%

16,705,789

19%

0.48%

5.22%

24.68%

244.24

Bichat2

15,128,135

0.05%

0.028%

0.04%

0.12%

33,589,838

12%

5.56%

2.98%

20.27%

170.81

Bichat3

14,488,245

0.05%

0.005%

0.03%

0.09%

17,276,637

34%

2.31%

5.96%

41.83%

480.59

Bichat6

17,476,666

0.07%

0.001%

0.05%

0.12%

19,191,320

25%

0.85%

5.84%

32.13%

261.87

Bichat7

16,732,926

0.07%

0.002%

0.05%

0.13%

28,530,922

27%

0.33%

5.99%

33.60%

267.77

Bichat9

17,058,000

0.03%

0.013%

0.05%

0.09%

18,038,257

14%

10.59%

7.55%

31.80%

336.29

Bichat10

15,039,883

0.03%

0.066%

0.06%

0.15%

34,798,281

6%

28.81%

5.48%

40.63%

265.17

Bichat11

13,425,077

0.03%

0.091%

0.06%

0.18%

35,901,508

5%

26.73%

4.72%

35.98%

201.67

Bichat13

17,903,872

0.05%

0.023%

0.06%

0.14%

26,283,052

16%

13.27%

7.39%

36.85%

270.02

F266

19,557,955

0.06%

0.005%

0.02%

0.08%

14,024,345

21%

4.62%

2.57%

28.23%

337.50

PIG20

27,375,311

0.08%

0.028%

0.01%

0.12%

22,485,364

18%

16.20%

1.81%

36.38%

298.23

PIG26

13,831,057

0.07%

0.005%

0.02%

0.10%

15,756,070

19%

3.88%

2.73%

25.93%

271.20

PIG29

18,945,765

0.09%

0.018%

0.02%

0.12%

26,223,850

18%

10.26%

2.52%

30.65%

248.31

PIG31

12,778,294

0.07%

0.010%

0.02%

0.09%

18,055,019

13%

5.76%

2.08%

20.77%

219.12

PIG528

19,689,471

0.06%

0.003%

0.02%

0.08%

13,864,257

21%

2.70%

3.11%

26.83%

323.23

PIG94

15,985,219

0.07%

0.004%

0.02%

0.10

15,351,408

18%

2.57%

3.31%

24.05%

240.20

PIG96

9,290,402

0.06%

0.001%

0.01%

0.07%

12,225,935

21%

1.13%

1.67%

23.84%

320.90