| Nasal swab | Nasopharyngeal aspirate | ||
---|---|---|---|---|
Richness, median (IQR) | ||||
 Number of genera | 6 (3–15) | 12 (6.5–20) | ||
Alpha-diversity, median (IQR) | ||||
 Shannon index | 0.58 (0.09–1.11) | 0.90 (0.52–1.40) | ||
Relative abundance of 15 most common genera, mean (SD), maximum | ||||
 Staphylococcus | 0.41 (0.43) | 1.00 | 0.02 (0.10) | 1.00 |
 Moraxella | 0.09 (0.21) | 0.99 | 0.31 (0.34) | 1.00 |
 Streptococcus | 0.05 (0.14) | 0.98 | 0.30 (0.30) | 1.00 |
 Haemophilus | 0.07 (0.20) | 1.00 | 0.20 (0.31) | 1.00 |
 Corynebacterium | 0.10 (0.22) | 1.00 | 0.01 (0.06) | 0.95 |
 Dolosigranulum | 0.05 (0.14) | 1.00 | 0.01 (0.04 | 0.70 |
 Enterobacter | 0.05 (0.18) | 1.00 | 0.00 (0.03) | 0.48 |
 Neisseria | 0.00 (0.01) | 0.19 | 0.02 (0.07) | 0.75 |
 Enterococcus | 0.02 (0.12) | 1.00 | 0.00 (0.01) | 0.23 |
 Bacillus | 0.02 (0.14) | 1.00 | 0.00 (0.00) | 0.02 |
 Acinetobacter | 0.02 (0.12) | 1.00 | 0.00 (0.02) | 0.25 |
 Prevotella | 0.00 (0.01) | 0.29 | 0.02 (0.05) | 0.58 |
 Alloprevotella | 0.00 (0.01) | 0.18 | 0.01 (0.04) | 0.56 |
 Veillonella | 0.00 (0.01) | 0.10 | 0.01 (0.03) | 0.27 |
 Gemella | 0.00 (0.00) | 0.06 | 0.01 (0.03) | 0.52 |