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Table 1 Pairwise ANOVA statistics of bacterial alpha diversity among sample types

From: Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks

 

OTU richness

Pairwise Tukey-Kramer contrasts among sample types

Woodlark

Skylark

Pairwise comparison

Estimate

SE

t

P

Estimate

SE

t

P adj

Cloaca

Brood patch skin

− 73.75

40.854

− 1.806

0.728

− 54.44

40.087

− 1.358

0.936

Feathers

− 242.83

39.171

− 6.199

< 0.001

− 212.08

40.087

− 5.290

< 0.001

Nest lining

− 139.52

39.171

− 3.562

0.019

− 89.65

45.87

− 1.954

0.630

Surface soil

− 106.15

41.897

− 2.534

0.262

− 51.74

42.431

− 1.219

0.967

Brood patch skin

Feathers

− 169.08

40.087

− 4.218

< 0.01

− 157.64

41.723

− 3.778

< 0.01

Nest lining

− 65.78

40.087

1.641

0.824

− 35.21

47.310

− 0.744

0.999

Surface soil

− 32.40

42.754

0.758

0.999

2.697

43.98

0.061

1.000

Feathers

Nest lining

103.31

38.380

2.692

0.190

122.43

47.310

2.588

0.237

Surface soil

136.68

41.158

3.321

0.04

160.33

43.980

3.646

0.015

Nest lining

Surface soil

33.37

41.158

0.811

0.998

37.91

49.312

0.769

0.999

 

Shannon diversity

Pairwise Tukey-Kramer contrasts among sample types

Woodlark

Skylark

Pairwise comparison

Estimate

SE

t

P

Estimate

SE

t

P adj

Cloaca

Brood patch skin

− 0.87

0.286

− 3.061

0.095

− 1.14

0.280

− 4.069

< 0.001

Feathers

− 1.37

0.274

− 5.012

< 0.001

− 1.41

0.280

− 5.041

< 0.001

Nest lining

− 1.46

0.274

− 5.319

< 0.001

− 1.27

0.320

− 3.971

< 0.01

Surface soil

− 1.32

0.293

− 4.491

< 0.001

− 1.48

0.267

− 5.009

< 0.001

Brood patch skin

Feathers

− 0.50

0.280

− 1.779

0.819

− 0.27

0.292

− 0.934

0.993

Nest lining

− 0.58

0.280

− 2.079

0.626

− 0.13

0.331

− 0.403

1.000

Surface soil

− 0.44

0.299

− 1.477

0.941

− 0.35

0.308

− 1.124

0.993

Feathers

Nest lining

− 0.08

0.268

− 0.313

1.000

0.14

0.331

0.421

1.000

Surface soil

0.06

0.287

0.199

1.000

− 0.07

0.308

− 0.238

1.000

Nest lining

Surface soil

0.14

0.288

0.491

1.000

− 0.21

0.345

− 0.616

1.000