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Table 1 Summary of sequence read processing

From: Perilipin-2 modulates dietary fat-induced microbial global gene expression profiles in the mouse intestine

Genotype

Diet

Total reads

Putative mRNA reads

% putative mRNA

Annotated mRNA reads

% of putative mRNA reads annotated

Unique transcriptsa

Unique enzymesb

Plin2KO

HF

23,259,351

12,202,390

52.46

8,324,287

68.22

354,623

1467

Plin2KO

HF

26,835,502

14,899,443

55.52

12,247,229

82.20

421,650

1499

Plin2KO

HF

30,521,645

16,599,182

54.38

13,388,961

80.66

403,966

1464

Plin2KO

HF

26,597,134

14,650,846

55.08

11,925,997

81.40

373,227

1465

Plin2KO

LF

22,294,860

12,361,287

55.44

10,610,304

85.83

331,728

1421

Plin2KO

LF

24,177,170

13,568,281

56.12

11,565,876

85.24

367,713

1453

Plin2KO

LF

27,308,384

15,414,942

56.45

13,153,267

85.33

337,142

1467

Plin2KO

LF

30,451,443

17,236,702

56.60

14,227,281

82.54

361,329

1481

WT1

HF

21,588,643

11,895,187

55.10

8,943,569

75.19

321,451

1462

WT2

HF

18,204,894

9,395,383

51.61

7,349,179

78.22

303,773

1453

WT3

HF

25,596,552

14,678,726

57.35

12,343,681

84.09

349,102

1466

WT4

HF

26,696,428

15,035,608

56.32

11,779,646

78.34

361,607

1468

WT5

LF

26,214,964

14,929,947

56.95

12,324,432

82.55

333,978

1480

WT6

LF

25,606,683

15,475,773

60.44

14,246,619

92.06

210,470

1407

WT7

LF

31,198,548

17,212,742

55.17

13,361,302

77.62

359,230

1471

WT8

LF

32,317,247

18,081,900

55.95

14,541,413

80.42

380,172

1474

  1. HF high fat, LF low fat
  2. aDefined as distinct transcripts identified in each sample
  3. bDefined as distinct enzyme classification (EC) numbers