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Table 1 Summary of sequence read processing

From: Perilipin-2 modulates dietary fat-induced microbial global gene expression profiles in the mouse intestine

Genotype Diet Total reads Putative mRNA reads % putative mRNA Annotated mRNA reads % of putative mRNA reads annotated Unique transcriptsa Unique enzymesb
Plin2KO HF 23,259,351 12,202,390 52.46 8,324,287 68.22 354,623 1467
Plin2KO HF 26,835,502 14,899,443 55.52 12,247,229 82.20 421,650 1499
Plin2KO HF 30,521,645 16,599,182 54.38 13,388,961 80.66 403,966 1464
Plin2KO HF 26,597,134 14,650,846 55.08 11,925,997 81.40 373,227 1465
Plin2KO LF 22,294,860 12,361,287 55.44 10,610,304 85.83 331,728 1421
Plin2KO LF 24,177,170 13,568,281 56.12 11,565,876 85.24 367,713 1453
Plin2KO LF 27,308,384 15,414,942 56.45 13,153,267 85.33 337,142 1467
Plin2KO LF 30,451,443 17,236,702 56.60 14,227,281 82.54 361,329 1481
WT1 HF 21,588,643 11,895,187 55.10 8,943,569 75.19 321,451 1462
WT2 HF 18,204,894 9,395,383 51.61 7,349,179 78.22 303,773 1453
WT3 HF 25,596,552 14,678,726 57.35 12,343,681 84.09 349,102 1466
WT4 HF 26,696,428 15,035,608 56.32 11,779,646 78.34 361,607 1468
WT5 LF 26,214,964 14,929,947 56.95 12,324,432 82.55 333,978 1480
WT6 LF 25,606,683 15,475,773 60.44 14,246,619 92.06 210,470 1407
WT7 LF 31,198,548 17,212,742 55.17 13,361,302 77.62 359,230 1471
WT8 LF 32,317,247 18,081,900 55.95 14,541,413 80.42 380,172 1474
  1. HF high fat, LF low fat
  2. aDefined as distinct transcripts identified in each sample
  3. bDefined as distinct enzyme classification (EC) numbers