From: A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis
OTU picking approach | CPU time (in mins) |
---|---|
AbundantOTU+ | 3.38 |
BLAST | 127.17 |
CD-HIT | 13.32 |
DNACLUST | 0.08 |
UCLUST | 0.21 |
UCLUST-ref | 0.69 |
UCLUST-ref-strict | 0.82 |
UPARSE | 0.28 |