Fig. 1
From: A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis
Schematic of the sl1p pipeline. The user input consists of FASTQ files and processing parameters. Upon input, the user can choose to deviate from the default parameters to choose from various options for OTU picking algorithms, taxonomic assignment, and reference database. Every step that sl1p utilizes is recorded in log and error files for the purposes of debugging, reference, and reproducibility. For more detail, see Additional file 1