Table 2 Summary of cancer types and bacterial presence
Cancer type | Total no. of seq. runs | Seq. runs with any bacterial read pair | Total no. of patients | Patients with any bacterial read pair | Samples1 | Samples with any bacterial read pair | ||||
|---|---|---|---|---|---|---|---|---|---|---|
Tumor | Normal | Tumor | Normal | |||||||
Solid tissue | Blood | Solid tissue | Blood | |||||||
AML | 553 | 197 (36%) | 187 | 117 (63%) | 192 | 0 | 0 | 117 (61%) | NA2 | NA |
BRCA | 754 | 90 (12%) | 430 | 90 (21%) | 425 | 26 | 0 | 87 (20%) | 3 (12%) | NA |
GBM | 1476 | 600 (41%) | 83 | 72 (87%) | 78 | 0 | 78 | 68 (87%) | NA | 59 (76%) |
KIRC | 647 | 72 (11%) | 401 | 72 (18%) | 398 | 22 | 0 | 72 (18%) | 0 (0%) | NA |
KIRP | 15 | 9 (60%) | 15 | 9 (60%) | 15 | 0 | 0 | 9 (60%) | NA | NA |
LUAD | 76 | 10 (13%) | 76 | 10 (13%) | 76 | 0 | 0 | 10 (13%) | NA | NA |
LUSC | 306 | 20 (7%) | 174 | 20 (11%) | 172 | 2 | 0 | 20 (12%) | 0 (0%) | NA |
OV | 1991 | 561 (28%) | 160 | 127 (79%) | 154 | 20 | 136 | 105 (68%) | 15 (75%) | 93 (68%) |
STAD | 143 | 142 (99%) | 71 | 71 (100%) | 71 | 0 | 0 | 71 (100%) | NA | NA |