A fast and robust protocol for metataxonomic analysis using RNAseq data

Microbiome

Table 4 Average classification performance by the assembler used

	Bacteria		Bacteria		Fungi		Fungi		Virus
	Species level		Genus level		Species level		Genus level		First taxon level
Assembler	TPR	FDR	TPR	FDR	TPR	FDR	TPR	FDR	TPR	FDR
Inchworm	0.82 ± 0.02	0.40 ± 0.10	0.88 ± 0.03	0.10 ± 0.09	1.00 ± 0.00	0.56 ± 0.11	0.98 ± 0.03	0.52 ± 0.11	1.00 ± 0.00	0.13 ± 0.12
Oases	0.74 ± 0.17	0.28 ± 0.12	0.80 ± 0.17	0.05 ± 0.05	0.96 ± 0.07	0.33 ± 0.23	0.93 ± 0.10	0.30 ± 0.21	0.98 ± 0.04	0.03 ± 0.05
p value	0.010	0.010	0.005	0.022	0.356	0.012	0.365	0.005	0.008	0.057

TPR and FDR are averaged across 9 experiments each, statistical significant results highlighted in italics

ISSN: 2049-2618