From: The gut microbiota in conventional and serrated precursors of colorectal cancer
CA cases vs. controls | HP cases vs. controls | SSA cases vs. controls | |||||
---|---|---|---|---|---|---|---|
Taxon | Mean countb | Fold change (95% CI) | q c | Fold change (95% CI) | q c | Fold change (95% CI) | q c |
Class | |||||||
Firmicutes; Bacilli | 506.3 | 2.11 (1.6, 2.78) | 2.45E−06 | 1.23 (0.78, 1.94) | 1.00 | 0.79 (0.49, 1.3) | 0.79 |
Firmicutes; Erysipelotrichi | 305.8 | 0.92 (0.79, 1.07) | 0.57 | 1.1 (0.85, 1.41) | 1.00 | 0.68 (0.52, 0.89) | 0.09 |
Proteobacteria; Gammaproteobacteria | 394.4 | 1.81 (1.19, 2.76) | 0.04 | 0.32 (0.16, 0.63) | 0.02 | 0.43 (0.21, 0.88) | 0.18 |
Genus | |||||||
Actinobacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces | 9.1 | 1.69 (1.32, 2.17) | 0.0006 | 1.24 (0.82, 1.87) | 0.99 | 1.07 (0.7, 1.64) | 0.98 |
Actinobacteria; Actinobacteria; Actinomycetales; Corynebacteriaceae; Corynebacterium | 1.0 | 3.73 (1.88, 7.4) | 0.002 | 0.78 (0.28, 2.22) | 0.99 | 0.86 (0.3, 2.5) | 0.98 |
Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus | 422.2 | 2.38 (1.76, 3.21) | 1.35E−06 | 1.26 (0.78, 2.05) | 0.99 | 0.72 (0.43, 1.21) | 0.65 |
Firmicutes; Clostridia; Clostridiales; NA; NAd | 2624.0 | 1.44 (1.26, 1.65) | 6.31E−06 | 1.18 (0.94, 1.47) | 0.92 | 0.98 (0.77, 1.25) | 0.98 |
Firmicutes; Clostridia; Clostridiales; [Mogibacteriaceae]; NAd | 16.2 | 0.78 (0.65, 0.94) | 0.06 | 0.85 (0.63, 1.15) | 0.99 | 0.89 (0.65, 1.22) | 0.88 |
Firmicutes; Clostridia; Clostridiales; [Tissierellaceae]; Peptoniphilus | 1.6 | 3.41 (1.83, 6.35) | 0.002 | 0.55 (0.21, 1.46) | 0.99 | 0.85 (0.32, 2.28) | 0.98 |
Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes | 45.7 | 1.23 (0.98, 1.54) | 0.30 | 1.96 (1.36, 2.84) | 0.03 | 1.02 (0.69, 1.52) | 0.98 |
Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea | 216.1 | 1.19 (1.05, 1.35) | 0.06 | 1.09 (0.88, 1.34) | 0.99 | 1 (0.8, 1.25) | 0.99 |
Firmicutes; Clostridia; Clostridiales; Veillonellaceae; Phascolarctobacterium | 115.4 | 1.91 (1.24, 2.96) | 0.04 | 1.12 (0.57, 2.22) | 0.99 | 0.85 (0.41, 1.76) | 0.98 |
Firmicutes; Erysipelotrichi; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus | 10.8 | 0.59 (0.39, 0.88) | 0.07 | 0.36 (0.19, 0.68) | 0.07 | 1.03 (0.53, 2.01) | 0.98 |
Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Sutterella | 430.2 | 2.06 (1.52, 2.78) | 8.60E−05 | 0.84 (0.52, 1.37) | 0.99 | 0.97 (0.58, 1.65) | 0.98 |
Tenericutes; Mollicutes; RF39; NA; NAd | 36.4 | 0.42 (0.22, 0.78) | 0.06 | 1.1 (0.44, 2.77) | 0.99 | 1.06 (0.4, 2.81) | 0.98 |