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Table 1 Weaning led to a change in relative abundance of 10 cultivable bacteria species

From: Rapid change of fecal microbiome and disappearance of Clostridium difficile in a colonized infant after transition from breast milk to cow milk

Species name

Representing OTUs

FDR P value

Change in relative abundance after weaning

Bacteroides caccae

5

1.55 × 10−7

Increase

Bacteroides uniformis

3

1.08 × 10−4

Increase

205

1.07 × 10−5

326

2.91 × 10−5

Corynebacterium durum

109

1.43 × 10−3

Increase

Ruminococcus callidus

65

7.13 × 10−3

Increase

Ruminococcus gnavus

6

5.09 × 10−5

Increase

217

3.50 × 10−5

249

2.30 × 10−6

322

2.83 × 10−3

Ruminococcus torques

28

4.96 × 10−7

Increase

Bifidobacterium adolescentis

128

3.57 × 10−5

Decrease

180

2.39 × 10−3

233

2.05 × 10−3

329

5.23 × 10−7

Bifidobacterium bifidum

162

6.61 × 10−4

Decrease

267

2.55 × 10−4

Escherichia coli

1

3.50 × 10−5

Decrease

121

3.06 × 10−3

131

1.73 × 10−3

144

1.83 × 10−4

189

7.93 × 10−3

223

2.47 × 10−3

243

7.41 × 10−4

Lactobacillus zeae

4

2.66 × 10−3

Decrease

169

3.21 × 10−3

247

2.83 × 10−3