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Fig. 3 | Microbiome

Fig. 3

From: ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses

Fig. 3

Principal coordinates comparing simulated samples based on a Jaccard distances to analyze FastTree-simulated communities (FTSCs), b Bray-Curtis distances to analyze FTSCs, c Jaccard distances to analyze ghost-tree-simulated communities (GTSCs), d Bray-Curtis distances to analyze GTSCs, e unweighted UniFrac distances where trees are computed using FastTree to analyze FTSCs, f weighted UniFrac distances where trees are computed using FastTree to analyze FTSCs, g unweighted UniFrac distances where trees are computed using FastTree to analyze GTSCs, h weighted UniFrac distances where trees are computed using FastTree to analyze GTSCs, i unweighted UniFrac distances where trees are computed using ghost-tree to analyze FTSCs, j weighted UniFrac distances where trees are computed using ghost-tree to analyze FTSCs, k unweighted UniFrac distances where trees are computed using ghost-tree to analyze GTSCs, and l weighted UniFrac distances where trees are computed using ghost-tree to analyze GTSCs. Blue points are simulated and real human saliva samples, and red points are simulated and real restroom surface samples. Plots were made using EMPeror software [26]

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