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Table 2 Diversity analysis within mice samples and between five samples

From: Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality

Sample name Shannon index (mRNA) Simpson index (mRNA) Fisher’s alpha (mRNA) Shannon index (16S rRNA) Chao1 index (mRNA) Chao1 index (16S rRNA)
Mouse cecal wall 3.83 16.51 23.26 2.00 1162 283
Mouse cecal flush 4.43 43.34 30.52 2.57 1055 411
Mouse combined 4.51 17.14 167.33 2.48 1709 523
Cow rumen 4.14 21.79 140.67 4.15 1461 1042
Kimchi 1.69 3.27 56.07 2.91 634 615
Deep sea 5.01 35.75 481.29 5.02 4408 4565
Permafrost 3.82 10.98 24.31 4.5 295 348