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Table 2 Diversity analysis within mice samples and between five samples

From: Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality

Sample name

Shannon index (mRNA)

Simpson index (mRNA)

Fisher’s alpha (mRNA)

Shannon index (16S rRNA)

Chao1 index (mRNA)

Chao1 index (16S rRNA)

Mouse cecal wall

3.83

16.51

23.26

2.00

1162

283

Mouse cecal flush

4.43

43.34

30.52

2.57

1055

411

Mouse combined

4.51

17.14

167.33

2.48

1709

523

Cow rumen

4.14

21.79

140.67

4.15

1461

1042

Kimchi

1.69

3.27

56.07

2.91

634

615

Deep sea

5.01

35.75

481.29

5.02

4408

4565

Permafrost

3.82

10.98

24.31

4.5

295

348