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Table 5 edgeR results for proteins discussed in the text with FDR ≤ 5 % (*): WS vs. NS microcosms

From: Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries

Protein assigned by MEGAN5 using SEED logFC adjPValue No. presenta
Pyruvate formate-lyase (EC 2.3.1.54) −1.12 5.89E-06* 24
Acetate kinase (EC 2.7.2.1) −1.41 8.71E-13* 24
NAD-specific glutamate dehydrogenase (EC 1.4.1.2) −4.20 2.87E-13* 23
Lysine 2,3-aminomutase (EC 5.4.3.2) −8.34 1.53E-10* 13
Tryptophanase (EC 4.1.99.1) −6.46 1.07E-15* 19
Histidine ammonia-lyase (EC 4.3.1.3) −1.86 2.62E-03* 22
Arginine deiminase (EC 3.5.3.6) −0.55 4.04E-02* 24
Carbamate kinase (EC 2.7.2.2) −0.86 6.86E-03* 24
Fructose-bisphosphate aldolase class II (EC 4.1.2.13) 1.08 8.07E-07* 24
Enolase (EC 4.2.1.11) 0.47 4.56E-02* 24
l-lactate dehydrogenase (EC 1.1.1.27) 1.90 2.98E-14* 24
Heat shock protein 60 family co-chaperone GroES 1.03 1.41E-05* 24
Chaperone protein DnaJ 1.34 1.59E-07* 24
Pyruvate oxidase (EC 1.2.3.3) 3.83 8.01E-26* 22
Iron-sulfur cluster assembly protein SufB 2.27 1.36E-14* 24
Acetolactate synthase large subunit (EC 2.2.1.6) 2.62 1.44E-05* 20
Ketol-acid reductoisomerase (EC 1.1.1.86) 1.92 2.54E-17* 24
Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.96 2.65E-04* 24
NADP-specific glutamate dehydrogenase (EC 1.4.1.4) 1.69 1.92E-05* 24
Glutamine synthetase type I (EC 6.3.1.2) 1.33 4.13E-10* 24
  1. aNumber of microcosms in which reads were assigned to that protein