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Table 5 edgeR results for proteins discussed in the text with FDR ≤ 5 % (*): WS vs. NS microcosms

From: Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries

Protein assigned by MEGAN5 using SEED

logFC

adjPValue

No. presenta

Pyruvate formate-lyase (EC 2.3.1.54)

−1.12

5.89E-06*

24

Acetate kinase (EC 2.7.2.1)

−1.41

8.71E-13*

24

NAD-specific glutamate dehydrogenase (EC 1.4.1.2)

−4.20

2.87E-13*

23

Lysine 2,3-aminomutase (EC 5.4.3.2)

−8.34

1.53E-10*

13

Tryptophanase (EC 4.1.99.1)

−6.46

1.07E-15*

19

Histidine ammonia-lyase (EC 4.3.1.3)

−1.86

2.62E-03*

22

Arginine deiminase (EC 3.5.3.6)

−0.55

4.04E-02*

24

Carbamate kinase (EC 2.7.2.2)

−0.86

6.86E-03*

24

Fructose-bisphosphate aldolase class II (EC 4.1.2.13)

1.08

8.07E-07*

24

Enolase (EC 4.2.1.11)

0.47

4.56E-02*

24

l-lactate dehydrogenase (EC 1.1.1.27)

1.90

2.98E-14*

24

Heat shock protein 60 family co-chaperone GroES

1.03

1.41E-05*

24

Chaperone protein DnaJ

1.34

1.59E-07*

24

Pyruvate oxidase (EC 1.2.3.3)

3.83

8.01E-26*

22

Iron-sulfur cluster assembly protein SufB

2.27

1.36E-14*

24

Acetolactate synthase large subunit (EC 2.2.1.6)

2.62

1.44E-05*

20

Ketol-acid reductoisomerase (EC 1.1.1.86)

1.92

2.54E-17*

24

Branched-chain amino acid aminotransferase (EC 2.6.1.42)

0.96

2.65E-04*

24

NADP-specific glutamate dehydrogenase (EC 1.4.1.4)

1.69

1.92E-05*

24

Glutamine synthetase type I (EC 6.3.1.2)

1.33

4.13E-10*

24

  1. aNumber of microcosms in which reads were assigned to that protein