Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries

Table 4 edgeR results for species-level spectra abundant in ≥5 samples: WS vs. NS microcosms

Species assigned to spectra by MEGAN5 LCA	log FC^a	adjPValue^a	Abundance >1%^b
Haemophilus parainfluenzae	−7.28	0.02*	13
Fusobacterium nucleatum	−7.20	3.90E-09*	10
Fusobacterium periodonticum	−10.06	5.76E-06*	10
Streptococcus salivarius	6.61	1.65E-06*	9
Streptococcus sp. F0442	5.89	0.02*	8
Fusobacterium sp. oral taxon 370	−7.96	1.32E-04*	7
Streptococcus vestibularis	7.09	6.54E-04*	7
Streptococcus thermophilus	5.25	0.04*	7
Eikenella corrodens	−8.36	6.22E-04*	5
Veillonella sp. ACP1	5.82	0.02*	5
Abiotrophia defectiva	−4.54	0.03*	5

^aInterpretation as per Tables 2–3
^bThis table only lists species combining FDRs ≤ 5 % (*) with relative abundances ≥1 % of the total species-level spectral count in five or more microcosms (13 species with FDRs > 5 % also met the ≥1 % relative abundance criterion—see Additional file 8, rows 26–38)