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Table 4 edgeR results for species-level spectra abundant in ≥5 samples: WS vs. NS microcosms

From: Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries

Species assigned to spectra by MEGAN5 LCA log FCa adjPValuea Abundance >1%b
Haemophilus parainfluenzae −7.28 0.02* 13
Fusobacterium nucleatum −7.20 3.90E-09* 10
Fusobacterium periodonticum −10.06 5.76E-06* 10
Streptococcus salivarius 6.61 1.65E-06* 9
Streptococcus sp. F0442 5.89 0.02* 8
Fusobacterium sp. oral taxon 370 −7.96 1.32E-04* 7
Streptococcus vestibularis 7.09 6.54E-04* 7
Streptococcus thermophilus 5.25 0.04* 7
Eikenella corrodens −8.36 6.22E-04* 5
Veillonella sp. ACP1 5.82 0.02* 5
Abiotrophia defectiva −4.54 0.03* 5
  1. aInterpretation as per Tables 23
  2. bThis table only lists species combining FDRs ≤ 5 % (*) with relative abundances ≥1 % of the total species-level spectral count in five or more microcosms (13 species with FDRs > 5 % also met the ≥1 % relative abundance criterion—see Additional file 8, rows 26–38)