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Table 1 HOMINGS taxon counts for plaque inoculums, NS microcosms, and WS microcosms

From: Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries

 

Number of taxa detecteda

Number of abundant taxab

Subject

P c

NSc

WSc

p ≥ 1 %

NS ≥ 1 %

WS ≥ 1 %

730

180

79

78

16

12

4

733

NDd

84

87

NDd

4

4

734

177

132

92

16

10

9

737

199

101

86

19

7

11

760

198

98

72

18

9

12

769

157

103

76

15

8

5

781

178

108

94

22

10

3

795

NDd

92

81

NDd

7

8

852

165

88

89

16

9

10

861

171

83

88

12

7

10

866

255

102

73

20

7

5

877

NDd

92

95

NDd

9

8

Mean ± SD

186.6 ± 29.1

96.8 ± 14.3

84.25 + 8.0

17.1 ± 3.0

8.25 ± 2.1

7.4 ± 3.1

  1. aNumber of taxon probes with a 16S rRNA read count >0
  2. bNumber of taxa detected at ≥1 % relative abundance (as a percent of total reads per sample) in five or more plaque samples
  3. c P plaque inoculums, NS no sucrose microcosms, WS with sucrose microcosms; these abbreviations remain consistent throughout Tables 15
  4. d ND not determined; DNA extracts of plaque samples from subjects 733, 795, and 867 could not be amplified