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Table 1 HOMINGS taxon counts for plaque inoculums, NS microcosms, and WS microcosms

From: Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries

  Number of taxa detecteda Number of abundant taxab
Subject P c NSc WSc p ≥ 1 % NS ≥ 1 % WS ≥ 1 %
730 180 79 78 16 12 4
733 NDd 84 87 NDd 4 4
734 177 132 92 16 10 9
737 199 101 86 19 7 11
760 198 98 72 18 9 12
769 157 103 76 15 8 5
781 178 108 94 22 10 3
795 NDd 92 81 NDd 7 8
852 165 88 89 16 9 10
861 171 83 88 12 7 10
866 255 102 73 20 7 5
877 NDd 92 95 NDd 9 8
Mean ± SD 186.6 ± 29.1 96.8 ± 14.3 84.25 + 8.0 17.1 ± 3.0 8.25 ± 2.1 7.4 ± 3.1
  1. aNumber of taxon probes with a 16S rRNA read count >0
  2. bNumber of taxa detected at ≥1 % relative abundance (as a percent of total reads per sample) in five or more plaque samples
  3. c P plaque inoculums, NS no sucrose microcosms, WS with sucrose microcosms; these abbreviations remain consistent throughout Tables 1–5
  4. d ND not determined; DNA extracts of plaque samples from subjects 733, 795, and 867 could not be amplified
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