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Table 2 Mean relative abundance of detected phyla and genera by group and visit

From: The administration of intranasal live attenuated influenza vaccine induces changes in the nasal microbiota and nasal epithelium gene expression profiles

  

Controls

LAIV

Phylum

 

Visit 1 (%)

Visit 2 (%)

Visit 3 (%)

Visit 1 (%)

Visit 2 (%)

Visit 3 (%)

 Genera (in italics)

      

Actinobacteria

37.46

38.94

35.42

45.97

23.52

38.96

  Corynebacterium

24.89

25.75

25.16

34.44

15.40

30.86

  Propionibacterium

10.29

11.09

8.00

6.66

6.21

5.35

  Actinomycetales

1.41

1.62

1.60

3.09

1.42

2.16

Firmicutes

32.18

25.56

41.56

40.71

51.34

44.99

  Staphylococcus

16.14

12.79

25.28

19.04

26.37

24.53

  Streptococcus

1.11

2.14

0.49

8.37

4.68

4.26

  Bacilli Class

2.67

2.10

4.10

3.60

4.80

4.32

  Bacillales

1.87

1.37

2.74

1.85

2.56

2.55

Proteobacteria

23.91

30.29

13.34

5.28

6.92

5.01

  Moraxella

11.66

22.16

10.51

0.68

0.02

0.12

  Pseudomonas

7.59

3.12

0.87

0.03

1.26

0.07

  Enterobacteriaceae

0.92

1.20

0.18

3.29

1.69

0.47

Bacteroidetes

1.40

0.85

0.04

2.60

7.87

4.95

  Bacteroides

0.00

0.00

0.01

0.00

6.26

4.13

Cyanobacteria

1.36

1.85

1.41

1.04

3.66

3.65

  Streptophyta

1.21

1.79

1.40

1.03

3.58

0.88

Fusobacteria

0.042

0.023

3.88

0.61

1.78

1.17

Phylum cumulative

96.35

97.51

95.65

96.21

95.09

98.73

 Genera cumulative

79.76

85.13

80.34

82.08

74.25

79.70

  1. The above shown are average relative abundances of the 6 most abundant phyla and 12 most abundant genera by group based on V3–V5 sequencing. Phyla are listed on the left while their corresponding genera are indented beneath. All OTUs had a ubiquity of over 90 % except Moraxella, Pseudomonas, Enterobacteriaceae, and Bacteroides. Bacteroides was notably almost exclusively present in the LAIV groups on visits 2 and 3. Cumulative genera and phyla representation is noted at the bottom
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Microbiome

ISSN: 2049-2618

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