Fig. 1

Phylogeny and individual statistics of the microbe selection. The cladogram shows the taxonomic relationships among the 301 microbes. In the four outer layers, the bars represent the relative individual genome size, number of genes, number of reactions, and in silico growth rate. The different colors represent the various bacterial classes. The leaf colors and shapes symbolize whether a microbe is a probiotic (green triangle), a pathogen (red diamond), an opportunistic pathogen (red circles), or a non-pathogenic bacterium (white triangles)