Table 5 Xander processing statistics with kmer length of 45 and count 1
From: Xander: employing a novel method for efficient gene-targeted metagenomic assembly
Sample name | HMPa | C1 | Corn |
|---|---|---|---|
File size (GB) | 1.7 | 46 | 349 |
Build memory (GB) | 1 | 60 | 200 |
Build time (h) | 0.3 | 6.4 | 41 |
Find starting kmers (h)b | 0.1 | 3.6 | 27.0 |
Search nifH timec | 0.3 (min) | 1 (min) | 6 (min) |
Search nirK timec | NA | 48 (min) | 36.7 (h) |
Search rplB timec | 1.1 (min) | 228 (min) | 49.4 (h) |